Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3221g00033 ATGCATATGCTACTGACCCTGTTGTTGGTGATTGCAATATTGGCAAGTGTAGGATCAACTGTAATTGATGACGAAGCCCTTCCCGGGTGCAAAAACACTTGCGGAAATGTTTCAATTCCATATCCATTTGGCATAGGCGTATCAACTGTCACAAGTGAAAACTGTTTCTTGGAGGAAGAATTGCAACTCAGGTGCGACAACAAGTCTACTTTATACCGCGGTAACGACAGTAACGTTCAGATTTTGAACATAACCCTCCAAGGTCAAATGGACATGTTATTTTCCGTCTCCAAGTTTTGCAAATTAGGATCTCATACTTTACCAGAAACAAGAATAAAAACACTATCTGATATAAAAAAAACACAAGGTAATGAACAGATGCTTAGTACTCCAGCTTTCACCATTTCTAGCGAGCATAACAAGTTTATTAGTGTAGGATGTGACACTTACGGCTATCTCAATAGTTTTCGTGACGGTAATAAGTATTCAACCGGGTGCTTAACAAGATGTAATAGCAATTATATCATAGGTGATGATATGCTAAGCGATGGAAACTGCACGGGGATAGGGTGTTGCCAGGTTGATATTCCTCCAAGAATGAACAATATTAGTTTACAAACATTTAGCTTTAACAATTTCAGTGACTCTTCGGAGTTCGACAATTGCAGCTCTTCCTTTGTTGTCAAAAATGGTTACTATAAATTCTCTCTGAGTGATTTAAAGGATTCCCCACACGAGGAACTTCCCTTAGTAGTTGATTGGGCTGTTGGAAATGGCACGTGTGAAAATTCAAGGAGGGAAGCCAACAATGCATGCAAGAAGAATAGCGATTGTGAGGACTCGGCCACTGGATATGGTTACCGATGCAAATGTAAACAAGGTTATGAGGGAAACCCGTATCTTCCTGCTGGTTGCCAAGATATTGATGAATGTAAGACATCAAACAATACATGCCTAAGTGAAAATAATTGTCACAACACCGATGGGTCTTACAAATGTTTCTGTCCTAAGGGGAAATATGGAGATGGAACAAAGGACGGAGGGTGCCACCGACGAAATATAGTTACCCAGGTTGTCATTGGAACAGGTGCAGGATTCATGGTTCTAATTGTGGGAATTTCCTCACTGTACTTAATATACGAGAAAAGGAAACTCGTCAAACTGAAGGAGAAGTTCTTTAAGCAAAATGGGGGTATCATTTTGCAACAACGACTCTCTGCAGGAGAAAACACTTCTCAATCTACTACAGTGTTCTCAGCAGAGGAACTTAAGAAGGCCACCAACAATTATGATGAGAGCTTAATCATCGGCAGAGGAGGTTATGGTACTGTTTACAAAGGAATTTTGTCAGATAAGAGAATTGTTGCCATCAAGAAGTCCAAAATTGTGGATCAGAGCCAAATTGAGCAATTCATAAACGAGGTGATTGTGCTATCACAAATTAATCACAGGAATGTGGTCAAACTCTTGGGTTGTTGTTTAGAGACAGAAGTTCCTTCACTGGTTTATGAATTTGTTAACAATGGTACCCTTTTTGATTATATACACAAAGAAGGCAAGGCAGGTAATGTATCTTGGAAAACAAGGCTAAGGATAGCAGCAGAGGCTGCAGGGGCTCTATCATATCTGCACTCAGCTGCTTCTATACCCATTATACATAGAGATGTAAAGACTGCAAACATTCTCTTGGATGACACTTACACTACTAAAGTGTCTGATTTTGGAGCATCAAGATTGGTTCCTCTTGATCAAACTGAATTAGCCACATTGGTGCAAGGAACTCTTGGTTATTTGGACCCAGAGTACATGCAAACAAGCCAACTTACTCAGAAAAGTGATGTGTATAGCTTCGGAGTAGTGCTTGTAGAGCTGCTTACAGGGGAAAAACCTCTTTGTTTTGACAGGTCAGAAGAGAAAAGAAGTCTTGCTATGCACTTTCTATCTTGCTTGCGAGAGGATCGCTTGTTTGAGGTTCTTCAATTTGGCATTTTGAATGTAGAAAATAAGGAGGAGATCAAGGAGGTTGCTATTCTTGCCACAAAGTGCTTGAGACTAAGAGGGGATGAGAGGCCTAGCATGAAAGAAGTGGCAATGGAGTTGGAGGGGATAAGGCTAATGGAAAAGCATCCATGGATCAACACAGATATGAGTCTAGATGAGACTCATTACTTGCTTCATGAGGCATCATCTAGCATTCATGAACATGGTGATATTGACGAAGCCCTTCCCGGGTGTAAAAACACTTGCGGAAATGTTTCAATTCCATATCCATTTGGCATAGGCGTATCAACTGTCACCGATCGCAACTGTTCCTTGGAGGAAGAATTGCAACTTTGGTGCAACAAGTCTACTTCTACTTTATACCACGGTAACGTTCAAATTTTGAGCATAACCCTCCAAGGTCAAATGGACATGTCATTTTTCGTCTCCAAGGTTTGCAAAAAAGGATTTGATAGAAACATGACATTCGGTAATAAACCCGGACTTAGAACTCCAGCTTTCACCATTTCTAGCGAGCATAACAAGTTTGTAAGTGTAGGATGTGACACTTACGGCTATCTCAATAGTTTTCGTGACGGTGAAAATTATTCAACGGGGTGCTTAACAAGATGTAATAGCAAAGTTGATATGCAAAGCGATGGAAACTGCACGGGGATAGGGTGTTGCCAGGTTGATATTCCTCCTGGAATGAAGAATATTACCTTACAAGCATTTAGCTATAACAATTTCAATGACTCTTCCGAATTCAACAATTGCAGCTCTTCCTTTGTTGTCAAAAAAGGTTACTATAATTTCTCTGTGAGTCATTTAAAGGATTTCCCATACAAGGAAGTTCCCTTAGTAGTTGATTGGGCTGTTGGAAATGACACGTGTGAAAATTCAAGGAGGGAACACAACAATTCATGCAAGAAGAATAGCGATTGTGAGGATTCGGCCACTGGATATGGTTACCGATGCAAATGTAAACGAGGTTATGAGGGAAACCCATTTCTTCCTGATGGTTGCCGAGACATTGAGGAATGTAAGAATGGTTCACATGACTGCATAAGCGATCAAAATTGTCGTGAAACAGAAGGGAGTTTTGAATGTTTCTGCCCTGATGGACAATTCGGAAATGGAAAAAGGGAAGGTGGAGGATGCCAAAAAAAGCGAGACGATACACTTACCAAGATTCTCATTGGTGCAGGTGCAGGATTAATGGCTCTATTTATGGTGACTTCTTGGCTATACCTTATATTCCAGAAAAGGAAACTCATCAAACTGAAAGAGAAGTTCTTTAAGCAAAATGGGGGTATCATTCTGCAACAGCGACTCTCTGCAGGAGAAAACACTTCTCAATCTACCACATTGTTCACAGCAGAGCAACTTAAGAAGGCCACCAACAATTATGATGAGAGTTTAATCATCGGCAGAGGAGGTTATGGTACTGTTTACAAAGGATTTTTGTCAGATAAGAGTATTGTTGCCATCAAGAAGTCCAAAATTGTAGATCAGAGCCAAATTGAGCAATTCATAAACGAGGTGATTGTGCTATCACAAATTAATCATAGGAATGTGGTCAAACTCTTGGGTTGTTGTTTAGAGACAGAAGTTCCTTCACTGGTTTATGAATTTGTTAACAATGGTACCCTTTTTGATTATATACACAAAGAAGGCAAGTCAGGTAATGTATCTTGGAAAACAAGGCTAAGGATAGCAGCAGAGGCTGCAGGGGCTCTATCATATCTGCACTCAGCTGCTTCTATACCCATTATACATAGAGATGTAAAGACTGCCAACATTCTCTTGGATGACACTTACACTACTAAAGTGTCAGATTTTGGAGCATCAAGATTGGTTCCTCTTGATCAAACTGAATTAGCCACATTGGTGCAAGGAACTCTTGGTTATTTGGACCCAGAGTACATGCAAACAAGCCAACTTACTCAGAAAAGTGATGTGTATAGCTTTGGAGTAGTGCTTGCAGAGCTTCTAACAGGGGAGAAACCTCTTGGTTTTGACAGGCCAGAAGAGAAAAGAAGTCTTGCGATGCACTTTCTGTCTTGCTTGACAGAGGATTGCATGTTTGAAATCCTTCAAGTTGGGGTTTTGAATGAAGGAAATAAGGAGGAGATCAAGGAGGTTGCTATTCTTGCAACAAAGTGCTTGAGACTAAGAGGGGAGGAGAGGCCTAGCATGAAAGAAGTGGCAATGGAGTTGGAGGGAATAAGGCTAATGGAAAAGCAACCATGGATCAACACGGACGTGAATCTAGAAGAGACTCATTACTTGCATCATGAGGCATCATCTAGCATTCAAGAACATGGTGATAGCAGCAGCCATCAAAATACTGGGTATGACAGCATCAAAGATCGTGTACACATTGACTTCGATGATGCAAGATGA 4386 0.4065 MHMLLTLLLVIAILASVGSTVIDDEALPGCKNTCGNVSIPYPFGIGVSTVTSENCFLEEELQLRCDNKSTLYRGNDSNVQILNITLQGQMDMLFSVSKFCKLGSHTLPETRIKTLSDIKKTQGNEQMLSTPAFTISSEHNKFISVGCDTYGYLNSFRDGNKYSTGCLTRCNSNYIIGDDMLSDGNCTGIGCCQVDIPPRMNNISLQTFSFNNFSDSSEFDNCSSSFVVKNGYYKFSLSDLKDSPHEELPLVVDWAVGNGTCENSRREANNACKKNSDCEDSATGYGYRCKCKQGYEGNPYLPAGCQDIDECKTSNNTCLSENNCHNTDGSYKCFCPKGKYGDGTKDGGCHRRNIVTQVVIGTGAGFMVLIVGISSLYLIYEKRKLVKLKEKFFKQNGGIILQQRLSAGENTSQSTTVFSAEELKKATNNYDESLIIGRGGYGTVYKGILSDKRIVAIKKSKIVDQSQIEQFINEVIVLSQINHRNVVKLLGCCLETEVPSLVYEFVNNGTLFDYIHKEGKAGNVSWKTRLRIAAEAAGALSYLHSAASIPIIHRDVKTANILLDDTYTTKVSDFGASRLVPLDQTELATLVQGTLGYLDPEYMQTSQLTQKSDVYSFGVVLVELLTGEKPLCFDRSEEKRSLAMHFLSCLREDRLFEVLQFGILNVENKEEIKEVAILATKCLRLRGDERPSMKEVAMELEGIRLMEKHPWINTDMSLDETHYLLHEASSSIHEHGDIDEALPGCKNTCGNVSIPYPFGIGVSTVTDRNCSLEEELQLWCNKSTSTLYHGNVQILSITLQGQMDMSFFVSKVCKKGFDRNMTFGNKPGLRTPAFTISSEHNKFVSVGCDTYGYLNSFRDGENYSTGCLTRCNSKVDMQSDGNCTGIGCCQVDIPPGMKNITLQAFSYNNFNDSSEFNNCSSSFVVKKGYYNFSVSHLKDFPYKEVPLVVDWAVGNDTCENSRREHNNSCKKNSDCEDSATGYGYRCKCKRGYEGNPFLPDGCRDIEECKNGSHDCISDQNCRETEGSFECFCPDGQFGNGKREGGGCQKKRDDTLTKILIGAGAGLMALFMVTSWLYLIFQKRKLIKLKEKFFKQNGGIILQQRLSAGENTSQSTTLFTAEQLKKATNNYDESLIIGRGGYGTVYKGFLSDKSIVAIKKSKIVDQSQIEQFINEVIVLSQINHRNVVKLLGCCLETEVPSLVYEFVNNGTLFDYIHKEGKSGNVSWKTRLRIAAEAAGALSYLHSAASIPIIHRDVKTANILLDDTYTTKVSDFGASRLVPLDQTELATLVQGTLGYLDPEYMQTSQLTQKSDVYSFGVVLAELLTGEKPLGFDRPEEKRSLAMHFLSCLTEDCMFEILQVGVLNEGNKEEIKEVAILATKCLRLRGEERPSMKEVAMELEGIRLMEKQPWINTDVNLEETHYLHHEASSSIQEHGDSSSHQNTGYDSIKDRVHIDFDDAR 1461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3221g00033 1461 SMART egfca_6 1004 1048 IPR001881 GO:0005509
Gabi3221g00033 1461 SMART egfca_6 307 350 IPR001881 GO:0005509
Gabi3221g00033 1461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 551 563 IPR008271 GO:0004672|GO:0006468
Gabi3221g00033 1461 SUPERFAMILY Protein kinase-like (PK-like) 1111 1401 IPR011009 -
Gabi3221g00033 1461 FunFam Wall-associated receptor kinase 2 1100 1205 - -
Gabi3221g00033 1461 Gene3D Laminin 955 1045 - -
Gabi3221g00033 1461 FunFam Wall-associated receptor kinase 2 1206 1438 - -
Gabi3221g00033 1461 FunFam Fibrillin 2 302 346 - -
Gabi3221g00033 1461 ProSiteProfiles Protein kinase domain profile. 430 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3221g00033 1461 ProSitePatterns Protein kinases ATP-binding region signature. 1136 1159 IPR017441 GO:0005524
Gabi3221g00033 1461 SUPERFAMILY Protein kinase-like (PK-like) 411 701 IPR011009 -
Gabi3221g00033 1461 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 324 335 IPR000152 -
Gabi3221g00033 1461 CDD STKc_IRAK 1136 1403 - -
Gabi3221g00033 1461 Gene3D Laminin 259 310 - -
Gabi3221g00033 1461 SMART serkin_6 1130 1412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3221g00033 1461 SMART serkin_6 430 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3221g00033 1461 ProSiteProfiles EGF-like domain profile. 954 998 IPR000742 -
Gabi3221g00033 1461 ProSiteProfiles EGF-like domain profile. 1004 1039 IPR000742 -
Gabi3221g00033 1461 SUPERFAMILY EGF/Laminin 1004 1039 - -
Gabi3221g00033 1461 CDD EGF_CA 307 342 - -
Gabi3221g00033 1461 CDD STKc_IRAK 436 703 - -
Gabi3221g00033 1461 Pfam Wall-associated receptor kinase galacturonan-binding 30 89 IPR025287 GO:0030247
Gabi3221g00033 1461 Pfam Wall-associated receptor kinase galacturonan-binding 745 802 IPR025287 GO:0030247
Gabi3221g00033 1461 ProSitePatterns Calcium-binding EGF-like domain signature. 307 333 IPR018097 GO:0005509
Gabi3221g00033 1461 Gene3D Transferase(Phosphotransferase) domain 1 506 720 - -
Gabi3221g00033 1461 Gene3D Transferase(Phosphotransferase) domain 1 1206 1423 - -
Gabi3221g00033 1461 MobiDBLite consensus disorder prediction 1427 1446 - -
Gabi3221g00033 1461 FunFam Wall-associated receptor kinase 2 506 723 - -
Gabi3221g00033 1461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1251 1263 IPR008271 GO:0004672|GO:0006468
Gabi3221g00033 1461 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 739 1413 IPR045274 GO:0007166
Gabi3221g00033 1461 Pfam Calcium-binding EGF domain 1004 1036 IPR001881 GO:0005509
Gabi3221g00033 1461 Pfam Calcium-binding EGF domain 307 344 IPR001881 GO:0005509
Gabi3221g00033 1461 SUPERFAMILY EGF/Laminin 306 342 - -
Gabi3221g00033 1461 CDD EGF_CA 1004 1035 - -
Gabi3221g00033 1461 SMART egf_5 260 306 IPR000742 -
Gabi3221g00033 1461 SMART egf_5 310 350 IPR000742 -
Gabi3221g00033 1461 SMART egf_5 957 1003 IPR000742 -
Gabi3221g00033 1461 SMART egf_5 1007 1048 IPR000742 -
Gabi3221g00033 1461 Gene3D Laminin 311 349 - -
Gabi3221g00033 1461 Gene3D Phosphorylase Kinase; domain 1 397 505 - -
Gabi3221g00033 1461 Gene3D Phosphorylase Kinase; domain 1 1097 1205 - -
Gabi3221g00033 1461 ProSiteProfiles Protein kinase domain profile. 1130 1412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3221g00033 1461 ProSitePatterns Protein kinases ATP-binding region signature. 436 459 IPR017441 GO:0005524
Gabi3221g00033 1461 Pfam Protein kinase domain 432 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3221g00033 1461 Pfam Protein kinase domain 1132 1396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3221g00033 1461 ProSiteProfiles EGF-like domain profile. 307 345 IPR000742 -
Gabi3221g00033 1461 FunFam Wall-associated receptor kinase 2 400 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3221g00033 Gabi-Chr3221 419485 436575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3221g00033 8 725 Receptor kinase-like Gene Family AT1G21230 45.368 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi3221g00033 Pkinase 3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3221g00033 - - gsj:114381577 1834.31