Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3221g00030 ATGGAAGCTGAGGATGGAACTAGTAATGCTGATAAGGCTGAACGAGCCGAACCGGATTTGTGTTTGAAGAATGAAGCTGTAAATAATGGGGTGACTATTGAAGGTGGGAATGGTGTTGCTGAAGGTGAAGAAGTTCGGGGCTTGAATGATGAAGCTGTAAATAATGGAGTGGCAATTGCTGATGGGAATGGTGTTTCTCAAGGTGGAGAAGTTCGGTGCTTGAAGAATGGAACTATAGTCAATGGAGTGTCTATTGCAGATGGGTTTGGTGTTGCTCAAGGTGGAGAGGTTCGGTGCTTGAAGAATGGAACCATAGTTAATGGAGTGTCAATTGCAGATGGGTTTGGTGTTCCTGAAGGGGACTGTGGTGGAATTGAATGTCTTAGAACTTATAAGAGGCGTAAGCATGTAAAGTCGAGTTCAGAAAGTAAAGTTCAGGAACACAGCAGAGAATATGTGGAAGCTGCAAGTCACCTATCAGACCAGGCTGTGAAGAAACCATGTGATTTAGCTGTAGGTAATACTTCAAAAGATTATTCACATGGACATTGGGGAAATGTTGTGCTAAAGCATTTATATCATTCATCAAGCAATGACAATGGTGGCATAGAGAGGTGCATTAGTGAAGCACCCATGAATCGTCCTAAAACTAGTTGTGACAATATAGTTATGGAAACTTCTAAAATTGACAAAGATGGTCAAGAATGCTCTTCAAAATTTGAGTGGTTGTCTCATAGATTACGGAGTGAAGCTAATGGGCATGCAAATGTCATGCATAATGGATTTTCTAGTGACTCACATTGTCACGGTGTGACTGAGAGGTGTCAGCATGTGTTCTGTAATATCTTAGCCTCTGAAAAGTTCAGTTCATTATGTAAAGTGCTACTTGAAAATTTCCCAGGAATGAAACCTGAAAGTCTATTTGACTTTAGTGTCATAAACTCAAGGATGAAAGAACACGCTTATGAACAATCACCTACACTTTTCTTGTCAGATTTTCAGCAGGTTTGGAGAAAGCTTCAAGATACTGGAAATGAGATTGTTGCTATTGCTAAGAGCCTCTCCAACATGTCAAAAGCTTCCTACTGTGAGCAGTTCTGTAACATGGAATCCGAGTCTCACATGAAACCAGAGCGAACAGAAGAATGTGGTACATATAAAATTTGCACTTGCAGGCATTGTGGAGACAAAGCAGATGGGAAAGACTGTTTGGTTTGTGATTCATGCGAGGAGATGTACCATGTGTCCTGTATTGAGCCTGCTGTGAAAGAAATACCCCACAAAAGCTGGTTCTGTGTCAATTGTACTGCTAGGGGAATTGGATCTCCTCATGAGAATTGTGTGGTGTGTGAAAGGTTGAATATACCAAAGACCCTGAACAACATTGTTGGTGAGGAAAGCATCCCTACAAATGAGGAAACACTAAATGAAGTGGAAGAGAATCCTAATTGTACTTATGATGGGATTCAAGTTTCCATAGGTGAGAAAAACTTCCCTGACTGCAAAATTTGTGGAATGGAGGTAGATGGTGAAAAAATAAAAATATGTGGTCACTCTTTTTGCCCCAGCAAATACTACCATGTAAGGTGTTTGTCAAGTAAGCAGATTAAGTCATATGGTCGCTGTTGGTATTGCCCTTCTTGTTTATGCCGAGTTTGCCTCACTGATCGAGATGATGATAAGATTGTTCTCTGTGATGGCTGTGATCATGCATACCATATCTATTGCATGATACCTCCAAGAACTTCTGTTCCAAAAGGTCAATGGTTTTGTAGTAAATGTGATGCAGGGATCCAAGTAATACGCCGGGCAAAAAAGGCATATGAGAGCAACAAGTTGAGAGCTGATGAAAATGTTTCAAAGCCAAATGATAATACTGATAAGAACTGGGAGAATAAACGTGGACAGGAATTGGACAAAGTTGGAGGAATGGACATGCTTTTAACTGCAGCCAATACTCTGAATTTTGAAGAGAACTTAGCTGCAGTCCAGATTGACTCACAGAGAACTTGA 2013 0.4069 MEAEDGTSNADKAERAEPDLCLKNEAVNNGVTIEGGNGVAEGEEVRGLNDEAVNNGVAIADGNGVSQGGEVRCLKNGTIVNGVSIADGFGVAQGGEVRCLKNGTIVNGVSIADGFGVPEGDCGGIECLRTYKRRKHVKSSSESKVQEHSREYVEAASHLSDQAVKKPCDLAVGNTSKDYSHGHWGNVVLKHLYHSSSNDNGGIERCISEAPMNRPKTSCDNIVMETSKIDKDGQECSSKFEWLSHRLRSEANGHANVMHNGFSSDSHCHGVTERCQHVFCNILASEKFSSLCKVLLENFPGMKPESLFDFSVINSRMKEHAYEQSPTLFLSDFQQVWRKLQDTGNEIVAIAKSLSNMSKASYCEQFCNMESESHMKPERTEECGTYKICTCRHCGDKADGKDCLVCDSCEEMYHVSCIEPAVKEIPHKSWFCVNCTARGIGSPHENCVVCERLNIPKTLNNIVGEESIPTNEETLNEVEENPNCTYDGIQVSIGEKNFPDCKICGMEVDGEKIKICGHSFCPSKYYHVRCLSSKQIKSYGRCWYCPSCLCRVCLTDRDDDKIVLCDGCDHAYHIYCMIPPRTSVPKGQWFCSKCDAGIQVIRRAKKAYESNKLRADENVSKPNDNTDKNWENKRGQELDKVGGMDMLLTAANTLNFEENLAAVQIDSQRT 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3221g00030 670 FunFam PHD finger protein EHD3 isoform A 293 439 - -
Gabi3221g00030 670 Gene3D - 293 438 - -
Gabi3221g00030 670 SUPERFAMILY FYVE/PHD zinc finger 549 602 IPR011011 -
Gabi3221g00030 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 600 IPR013083 -
Gabi3221g00030 670 ProSiteProfiles Zinc finger PHD-type profile. 388 438 IPR019787 -
Gabi3221g00030 670 ProSiteProfiles Zinc finger PHD-type profile. 547 597 IPR019787 -
Gabi3221g00030 670 SMART PHD_3 552 595 IPR001965 -
Gabi3221g00030 670 SMART PHD_3 500 549 IPR001965 -
Gabi3221g00030 670 SMART PHD_3 390 436 IPR001965 -
Gabi3221g00030 670 SUPERFAMILY FYVE/PHD zinc finger 384 437 IPR011011 -
Gabi3221g00030 670 PANTHER OS02G0192300 PROTEIN 375 484 - -
Gabi3221g00030 670 Pfam PHD-finger 550 595 IPR019787 -
Gabi3221g00030 670 Pfam PHD-finger 391 437 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3221g00030 525 613 C2H2 Transcription Factor Family AT3G01460 39.796 8.31e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3221g00030 PHD 1.1e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3221g00030 - - gmx:100810450 921.383