Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3221g00023 ATGGATCACTCACACTTCCTTCACCAACAACACCATCACCAACGCACAAGATACGCTACTCTACAACCTCAATCTCATCATCACAACCCTAACCACCTACCTCCGCCGCCTCTTCCTCCCCCTCCTCCCCCTCCCCCTCCTCAGACACTCTCATACCGCACCATCCGCACCCCTCCTCCTCCACCCTACAACAACCCTCAACCTCATCAATCCCAACAATTCCCTTTCAACTCCTCCACCAACCACCACATCCACGCCGCCTTCTCCAATCGGATCCTCTCCGATGACATCCTCCCCCGCCGTACCCTCCCTGATTTCGACCGCCGCAAACCTGAAACCTCCTGGAACCCTAGCCCCAGGGTCGTCCCCGATGATCGGCCGCTCAGGAGTTACCCTCCCGTCGATTTCGACCGGGAATTGCATCAGCATCAGCATCAGCATCAGCATCACCGTCCTCCTCCTCAGTCGTATCCGCCGATCGACAATCTCCGGTACGATCCGGAGGGTGGGACCTCGAGGTTGAGAATTGAGCGTGTGGAAGCCTACGATGGAAACCCTAGGGTGTGGGATAGAGGAGGCGATGGAAACTATCACCGCCGCGTGCTCGACGCGGAACCTGGCGGCGGCATGGGGGCGTCCAGGGAATCGGATATTGATTTGAAATCTGGTGGTTATGTTCGTGTGTATGGTGTGGAATGTGAGGATGAAGTGGCCACAAGGGGTGGCAGAGTTGAGAGCAAGAGGTGGGTGAATGATAGGAAGGGAATTAGAGAGTTGCATGATTCTTCTTCCTTTGAAGTGGGGAATAACGAGATTGGTGCTGCATCGAAACGAGAGTATTATGGTTCAGAAACGGCTAGGTATAATTACAGAGGGAACAGCAGGGACTCTGGTCATGAATTTACTCGCACTCCGCCTAAGAAGCAGATACAGAAGAAGAGTGCTCTTCTTAGACTTCAGACGGTAAAACCCAATCATAGGAACCGCGAGATTGAACAGTTACGTTATCCTGGCTATGCTCCTGATTCTAACTCTAATTTCTTCAGGGGTAGGGAGCACCAACATGGGTATTCAGGTCATGGGATGAAAGCAGAAGAGAGAGAGGGAAGCCCTGTCGACCTTGATATCTCATTCGAATCAAATTCCCTGGTGGCCAAAGCTATTGTGGCACCTTCAAGTTCGGCCCCTGTTTCGGATTCGAATATGAATCCTGTTTCTGATACATATTTGAGTTCTGCTGAGAAGAGTAAAAAGGTTTTCGTCTCTGAACTATCTACACCTGCTGTAAATTTAAATAGTTCACCAGGGAAAGCAAGTGACACCTCTAGTTCTGTCAAGGACTTGAGCCTGCAGAAGAATGTCCCCGATGTTTCTTCTCAGCCTAGCACCAGTGTGACCCATAATCCTCATGGGAAAAATGAGGTGCTGCATTCAGTTGGAAATACCAATAGTAAATCATCCCCAAGGGTTGTCAAGAAGAAAAAAATAATTGTCAAAAAACTGGTGAAGAAAGCTGCTATAAATCCTAATTCAACTGTGTCAAATTCACTATCAGCAAATGTGGTTTGTGGAACTGTGCAAGCAGATAGTGTCATACCTAGTTCATCAACTGCCTCTGGTCCTGACAAAACTAAAGGGAAAAGCACCGCTGTTGACAAGGTGCCTGTGGCTGACTGTTTGCACTCTTCACCAAACAAAGGGAATGTATTGACTGAAGATAAAAAGGGAGATATATCCCTTAGTTTGGGGCCACATTCCAGGTCACAGGAATGTAACACTGATGAAGATTCTGATATTGGGAAAGTATCCAGGTTTGAGAGAGGTGGAAACATTTCAAATTCTCCATCTCAGGCATCTAGTAGTGAATATAAAAAGAGTGATTCTTATTGTTTAGATGCAAATAATTCTGTTCTTGACTTGCCTAGCATGCCAAATACTGACAAGGTTACTGAATCATTAAATGGAAGTACTTTTTCAGAAATCAATCACATGGATTATGATAATAAGCAATTATGTCAGATTGAAGTGTCTCTATCACCTGGGAAATATTCAAATTTAGGATGCCCACAGAATAGCAATCTTGTGGACTTAGGGGATGAAATGAATTACAGATTTTTTAGTTCAGCTGACAGTACAACTAACACAGATCTTATAAATATAAGTAATTCTGCCAATGACAGGGTTTATGGCTTCAATTCCAATGATCTTACAAGTTCAAAAGAGATATTTATTGTTACTGACAGTGGGAATAATGGCACTGTTGGTAAGGCATATAGTGAAAATATGGCATCTACAATCCCTCAGTATGCTATTCTGGAAGAAAATTCAGATACAGCCATCCCTCTGCAAAGCAGTGGAATGGCTGCTTATTCAAGTTCAGGAAAAACTAGGATTCAAGATGGTCTTGATTGCCTACAACATGCCAGTGTACTGAAGCAGGGTTCTGATAGTGGAACATCTAATTTAGAAGATAGTATCACTGTTCACCATTATGGTGTCATGAACGATGCTGGAAAGCAGGTGTCCCCCCGTGATGTCACCATTACCCCTGAGAATTGTTACACAGAAGAAACTTTCCCAAAATCCAATATTTCAGTTGGGTCTGGCGAAGGGGTTACGAATAAGATAAAAAAGAGAACAGTTAGGACTCGAATAAAAATTTTGAGTTCAAAGATGGAGGGCATATCTCCAGACTGTGTAAATCCAGTTAGCCAAGCAAATGATGTTGATAGAGGCTCAAGTCTGTTGTTGAAGGATCCATGTCCTTCGGAAGTTATAGATCAACCTGTTCAAAGCTTATATTTTAACTCACAGCCCAGTTTGGATGGGGTCAATGCTTTACATGGGAAAAGGCGGTTTTTAGAGGCTAAATTTCATGTTGGAAATAATGACTCTGATGAAGCAAATAAGGTTTCATCAGTTTCTAAAAGGAAAAAAGTCACTTCTAGTCACCCAAATTTCACTCAAAGTCAATCTGAATTCAGCGATGCTATTGTGGCTTCCACATCTAGTTCAGAAGTTCCTATCAGTTTCAGTGATAACCAAGCACATCAGAAAGAAGAAGTTGCATTGTCAAGCATGGGTATTCTGTCCACTGCTCAGTCTATGCCTTATTCAGAGGATATTGCTAAATTGTCTGACAATATATTGGCTGTAGGATCTTTTGAGTCTATGGATGTAAATAGGGAAACAACGAGTTCTGAGCATTTGGAATTGCAGCCCTCAGATATTGTCTCTTGTTCATTGTGTGAGGACTTGGCCTCTCCAAATGTTCAGCTCTCATTGGTGGAAGGTGAGCAGAAAGAAATTATTACTCCAATTGTGCCTATAAGTAATATTCAAACTGACATTATGGTGATTGGAAATATTACGGGAGAAAAGAATGATTTACAGGCTGTTGAAGAAAGTTTCCAGTATAGAGACTTTATGCAAAGGTCTCCAAGTGCTGATATGGAATCTAATGATCTTAATGTGAAGGATGATTTACTTGCTCTGCAGAACCTTATGTCGTGTCCTCCTGATGTTGATGGTGTCACTACCAGTAATTCAAATGATGAATTGATTGAGGATGTGCCTGATGCATTATCAGATATGTGTTCTCAAGGTATGCAATCTGAAGTACCTGATAGAGGGATTTTAGAATTTACAGCAATCCATGATGAAAACATTTGTGGGGATGAAGAAAATCTGGATGAGATATCTATGAGCTCTGACTTACATACGTCATCAATACAGCATCCTAGAAAAGTTATGAAGTCAGATCATGCAATTGGATGTAGTGACCCAATCGTGAGGAAGATAATGCCACAACCATCCCAAGTTTACTCCAAAGTTACAGCTAAGGGTCTAAATTCACATTATTCAGAATTAAATATGAGCAAAAATCAGCCTGGTGGTGTCATTCCTAAAACTTTCCAGGGTCATTCTTTCACCTTTTCAAAGTCAAAGACAAAGACATCTGCCTCCTCAACCCAAATATCTATACCTCGAACTTGGCATCGTACATGGAATAATTCTCCTGCTTCTCTACCTGGAATCAAGCCTTCGGTAGGTACAGTTCCTCCCAAAAGGCCAATTCTAGAAGGGAAAGGGAACTTTCAGAATACTTCTTACGTTCGTAAAGGTCACAGTCTCGTAAGGAAACCTACTCAAGTTTCTGCTTTACCTCAAATCTCCTCTGCTAATCAGTCACCTTCCTTGGGCTTAGGTCAAATCCCAAAGAGCACCAGATCTAAAAACAGGGCTGATATGACAGATCAACCAATCTACTTGAAAACAGAAGTAACAAATGTGCCTCTCGAGAGGCAGAGAACACCTCCACTATCCGTTGACACCAAACCAGAGGAAAATATATCTTCCCCATTGGTAGAACCTCCTTCCAGTGGTTGCTGTGAAAATGCATCAGAACCTAGGAAATTTGTGGAAACTAAAGATGCACTGAATCATTATGAAACTCCTGAAAATCAATCTGGTCCATCTAATAATGGGGAAAGCGAAGTTGAAGCGAATGATGGGAATATTTCTTCTTTGAACACCAAGAGAATAGTATATGTAAAGCCCAAAACAAATCAATTGGTTGCAACCTCAAATTCTTGTGATGTTTCTGTCTCTACTGATGACAAGGGCCAAACAGCTTTCTCCGATGGCTACTACAAGAGGAGCAAAAATCAATTGGTTAGGACTACATTTGAAAGTCATATCAACCAGACAGTTGCAATGCCCAATAGTAATGTAAATTCTGATGGGCAAGGGGCTAGTAAGGTTCTTTGCAACAGGAGGTTTAGTAAGAGGCGGTCACATAAGGTTGCTGGAAGTTCATGTAAACCTTCAAGAGCCTCATTAGTCTGGACCCTTCGTGGCAAAAATTCATCCAAAAATGACAGGGACTCATGGCATTATCAGAAGGTTTTACCTCACTTGTTTCCATGGAAAAGAGCAATATATTTAAGGAGCTTCATTCATAGTTCTGCTTCAAGCTTCAATAGTAGTTCCTTATCTTCAATCAGCAAGAAATTGCTTCTGCTGAGAAAGAGGGATACTGTTTACACTAGATCGACCCATGGGTTCTCTCTTTGGAAATCCAAGGTATTAGGTGTTGGTGGGTCTAGTTTAAAATGGTCCAAATCCATTGAGAAGCACTCAAAGCAAGCTAATGAGGAAGCTACACTTGCCGTTGCTGCAGTAGAGAGGAAGAAGAGAGAGCAGAAAGATGCAGTTTGCATCAGTTCTCAGGCAAAGAGAGAACGAATATTTCGTATTGGTTCAGTTCGCTACAGAATGGATCCTTCCAGGCGGACACTTCAAAGGATTTCAGACGATGAATCCATGTCCTCTGCCTCTATCTGTTCAGGTTTGGCTGCCAAAAGAGCTTACATTCCGAGGAGATTAGTGATTGGAAATGATGAATATGTCCGAATTGGCAATGGTAACCAGCTTATTAGGGACCCGAAGAAACGAACTAGAAAATTGGCTAATGAAAAAGTTAGATGGAGCTTGCACACAGCCAGACAGCGGTTGGCTCGAAAGCAGAAGTATTGTCAGTTTTTTACTAGATTTGGGAAGTGTAACAAGGATGGAGGGAAGTGTCCTTATATTCACGATCCCTCTAAAATTGCTGTCTGTACTAAGTTCCTGAATGGTTTATGCTCTACTCCCAACTGCAAATTGACTCATAAGGTTATTCCAGAGAGAATGCCCGACTGTTCTTATTTTTTACAAGGCTTATGCAGTAACAGAAATTGTCCATACAGACACGTCAATGTGAACCCTAAAGCATCTATTTGTGAAGGATTTCTTAAGGGTTATTGTGCAGATGGGAATGAGTGTCGGAAGAAGCACAGCTATGTCTGTCCTAGTTTTGAAGCAACAGGAACCTGTACTCATGGAACGCAATGCAAGCTTCATCATCCCAAAAAACAAAGCAAGGGAAAGAAAAGAAAGAGATCTGGAGATCAGAACAGCAGTAGAGGGCGTTACTTTGGTTCTATCCCTGTTGATGTTTCTGAACCTCGGATGATGATGGCTCTAATGCAAATTCAACATAATGATGACCTTGAAGGAGAACTTTCCGACTACATCAGCCTCGATGTTAATGAAGAAGTTGCAGACACTGCTGATCAATCATTCGAGCAAGCAACATTGTGTGACAATGATTCCTTGGATTCACAGTTGGATAATTGGGATGATCTTATTAAACCAGTTCTTATAATGAAAACAAAATTCACGCCGCAACAATCTTAG 6240 0.4237 MDHSHFLHQQHHHQRTRYATLQPQSHHHNPNHLPPPPLPPPPPPPPPQTLSYRTIRTPPPPPYNNPQPHQSQQFPFNSSTNHHIHAAFSNRILSDDILPRRTLPDFDRRKPETSWNPSPRVVPDDRPLRSYPPVDFDRELHQHQHQHQHHRPPPQSYPPIDNLRYDPEGGTSRLRIERVEAYDGNPRVWDRGGDGNYHRRVLDAEPGGGMGASRESDIDLKSGGYVRVYGVECEDEVATRGGRVESKRWVNDRKGIRELHDSSSFEVGNNEIGAASKREYYGSETARYNYRGNSRDSGHEFTRTPPKKQIQKKSALLRLQTVKPNHRNREIEQLRYPGYAPDSNSNFFRGREHQHGYSGHGMKAEEREGSPVDLDISFESNSLVAKAIVAPSSSAPVSDSNMNPVSDTYLSSAEKSKKVFVSELSTPAVNLNSSPGKASDTSSSVKDLSLQKNVPDVSSQPSTSVTHNPHGKNEVLHSVGNTNSKSSPRVVKKKKIIVKKLVKKAAINPNSTVSNSLSANVVCGTVQADSVIPSSSTASGPDKTKGKSTAVDKVPVADCLHSSPNKGNVLTEDKKGDISLSLGPHSRSQECNTDEDSDIGKVSRFERGGNISNSPSQASSSEYKKSDSYCLDANNSVLDLPSMPNTDKVTESLNGSTFSEINHMDYDNKQLCQIEVSLSPGKYSNLGCPQNSNLVDLGDEMNYRFFSSADSTTNTDLINISNSANDRVYGFNSNDLTSSKEIFIVTDSGNNGTVGKAYSENMASTIPQYAILEENSDTAIPLQSSGMAAYSSSGKTRIQDGLDCLQHASVLKQGSDSGTSNLEDSITVHHYGVMNDAGKQVSPRDVTITPENCYTEETFPKSNISVGSGEGVTNKIKKRTVRTRIKILSSKMEGISPDCVNPVSQANDVDRGSSLLLKDPCPSEVIDQPVQSLYFNSQPSLDGVNALHGKRRFLEAKFHVGNNDSDEANKVSSVSKRKKVTSSHPNFTQSQSEFSDAIVASTSSSEVPISFSDNQAHQKEEVALSSMGILSTAQSMPYSEDIAKLSDNILAVGSFESMDVNRETTSSEHLELQPSDIVSCSLCEDLASPNVQLSLVEGEQKEIITPIVPISNIQTDIMVIGNITGEKNDLQAVEESFQYRDFMQRSPSADMESNDLNVKDDLLALQNLMSCPPDVDGVTTSNSNDELIEDVPDALSDMCSQGMQSEVPDRGILEFTAIHDENICGDEENLDEISMSSDLHTSSIQHPRKVMKSDHAIGCSDPIVRKIMPQPSQVYSKVTAKGLNSHYSELNMSKNQPGGVIPKTFQGHSFTFSKSKTKTSASSTQISIPRTWHRTWNNSPASLPGIKPSVGTVPPKRPILEGKGNFQNTSYVRKGHSLVRKPTQVSALPQISSANQSPSLGLGQIPKSTRSKNRADMTDQPIYLKTEVTNVPLERQRTPPLSVDTKPEENISSPLVEPPSSGCCENASEPRKFVETKDALNHYETPENQSGPSNNGESEVEANDGNISSLNTKRIVYVKPKTNQLVATSNSCDVSVSTDDKGQTAFSDGYYKRSKNQLVRTTFESHINQTVAMPNSNVNSDGQGASKVLCNRRFSKRRSHKVAGSSCKPSRASLVWTLRGKNSSKNDRDSWHYQKVLPHLFPWKRAIYLRSFIHSSASSFNSSSLSSISKKLLLLRKRDTVYTRSTHGFSLWKSKVLGVGGSSLKWSKSIEKHSKQANEEATLAVAAVERKKREQKDAVCISSQAKRERIFRIGSVRYRMDPSRRTLQRISDDESMSSASICSGLAAKRAYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDGGKCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHKVIPERMPDCSYFLQGLCSNRNCPYRHVNVNPKASICEGFLKGYCADGNECRKKHSYVCPSFEATGTCTHGTQCKLHHPKKQSKGKKRKRSGDQNSSRGRYFGSIPVDVSEPRMMMALMQIQHNDDLEGELSDYISLDVNEEVADTADQSFEQATLCDNDSLDSQLDNWDDLIKPVLIMKTKFTPQQS 2079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3221g00023 2079 MobiDBLite consensus disorder prediction 965 988 - -
Gabi3221g00023 2079 MobiDBLite consensus disorder prediction 1389 1411 - -
Gabi3221g00023 2079 MobiDBLite consensus disorder prediction 102 161 - -
Gabi3221g00023 2079 FunFam zinc finger CCCH domain-containing protein 3 1870 1921 - -
Gabi3221g00023 2079 MobiDBLite consensus disorder prediction 531 550 - -
Gabi3221g00023 2079 MobiDBLite consensus disorder prediction 1483 1507 - -
Gabi3221g00023 2079 SMART c3hfinal6 1840 1868 IPR000571 GO:0046872
Gabi3221g00023 2079 SMART c3hfinal6 1922 1948 IPR000571 GO:0046872
Gabi3221g00023 2079 SMART c3hfinal6 1869 1893 IPR000571 GO:0046872
Gabi3221g00023 2079 SMART c3hfinal6 1949 1971 IPR000571 GO:0046872
Gabi3221g00023 2079 SMART c3hfinal6 1895 1920 IPR000571 GO:0046872
Gabi3221g00023 2079 MobiDBLite consensus disorder prediction 29 68 - -
Gabi3221g00023 2079 MobiDBLite consensus disorder prediction 288 312 - -
Gabi3221g00023 2079 FunFam Zinc finger CCCH domain-containing protein 7 1923 1984 - -
Gabi3221g00023 2079 ProSiteProfiles Zinc finger C3H1-type profile. 1944 1972 IPR000571 GO:0046872
Gabi3221g00023 2079 MobiDBLite consensus disorder prediction 1389 1467 - -
Gabi3221g00023 2079 Coils Coil 1718 1738 - -
Gabi3221g00023 2079 MobiDBLite consensus disorder prediction 607 625 - -
Gabi3221g00023 2079 MobiDBLite consensus disorder prediction 555 625 - -
Gabi3221g00023 2079 MobiDBLite consensus disorder prediction 22 78 - -
Gabi3221g00023 2079 MobiDBLite consensus disorder prediction 428 487 - -
Gabi3221g00023 2079 Gene3D - 1868 1922 - -
Gabi3221g00023 2079 ProSiteProfiles Zinc finger C3H1-type profile. 1840 1869 IPR000571 GO:0046872
Gabi3221g00023 2079 MobiDBLite consensus disorder prediction 428 491 - -
Gabi3221g00023 2079 MobiDBLite consensus disorder prediction 293 307 - -
Gabi3221g00023 2079 MobiDBLite consensus disorder prediction 1443 1459 - -
Gabi3221g00023 2079 ProSiteProfiles Zinc finger C3H1-type profile. 1895 1921 IPR000571 GO:0046872
Gabi3221g00023 2079 PANTHER CCCH ZINGC FINGER 297 2072 - -
Gabi3221g00023 2079 MobiDBLite consensus disorder prediction 1965 1979 - -
Gabi3221g00023 2079 Gene3D - 1923 1986 - -
Gabi3221g00023 2079 MobiDBLite consensus disorder prediction 589 603 - -
Gabi3221g00023 2079 MobiDBLite consensus disorder prediction 1963 1995 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3221g00023 1846 1975 C2H2 Transcription Factor Family AT2G32930 31.618 4.93e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi3221g00023 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3221g00023 - - lja:Lj1g3v0268620.1 2392.85