Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3221g00022 ATGCTGCAAATGGGCACCGCCGGAGAAGCCACCGACGGAAGCTCCGGTGGCCGGACGGTGGTAGTGGGGGTGAAGATGGACTCTCACAGCAGAGAGTTGCTCACTTGGGCTATGGTCAAAGTTGCTCAGCCTGGTGATGTTGTGGTTGCTCTTCATGTTCTTGAAATTGTGAACCGGGATGGAAAATCGTCTCTGTTTTCGGTCGTCAAAGCGTTTGACTCTGTTCTTGCTGTTTATGAAGGATTCTGCAATTTAAAACAGGTTGATCTGAAGCTCAAAATTTGCCGGGGTTCATCGGTGAGGACAATTCTGGTTCGAGAAGCAAATGCTTATTCTGCAACTCATGTTATAGTTGGAACACCTCGAGGTCTTCATAAAATCCGGCCATCTACTTCTGTAGCTAAGTACTGTGCTAAGAAGTTATCCAAGGATTGTTGGGTTCTTGCTGTTAATAATGGGAAAGTTGTGTTCAAGAGAGATGGCTCACCAGCAAATCGTGCTGACTTAAAAGGATTTGATCTGGATCAAAGAAATGGGTTGCTCGGTTCGATTCACTGGACACTCAGCAAGAGTTCAAAAGTACTAAATGATGAGGGTAGTGGTCAAATTTCAGATCACAGCTTAGCTAAGGTTTTTATGGATTCTGCAGAAGTCAATGGAAAAAAGAGTTGCTTTATTTGTGCTTCAACCCCAGCATTGCCAGAATCATCTTGTAACTCATCTACAGAAGAGTCTTCTGGTGATGTTAGTAATGAGAATAACTCTGTGGCTATAGTACCTGTACCTGAGTTGAAACCAGGTTGGCCTCTACTACACAAGACAATTTTATCAGAGAGGCAATCTACTGAAAGATCATTGTTGCGCCAGATCTCTGTGGTTCAGTGGGCAATGCGGTTGCCCTCTAGAAATATTTCATATGCTGCAAATCATGACCTCAAAGAAAGCAATTGTGACCGAGATAAAGATCAATTTTTGGCTCTAGATAGCAAAAGTGGCGCTCTTGTTCCAGTGGATGCTGAAATAGGGACTGCTTCTTCGCCTGAACGTAATTCAAGAAGCATTCCTAAAGAATTGGAGGGCCTTCATGAGAAATACTCATCGACTTGCAGATTGTTCAAGTACCAAGAACTTGTATCAGCAACATCAAATTTCTTGCCTGAAAATTTGATTGGGAAAGGAGGAAGTAGTCGGGTTTATAGAGGATGCCTTCCTGATGGCAAGGAACTTGCTGTTAAGATCTTAAAGCCTTCTGATGATGTTTTGAAGGAGTTTGTTCTAGAAATAGAAATTATCACTACCTTGCATCACAAAAACATTATTTCCCTCGTTGGGTTTTGTTTTGAAGATGGCAATCTTCTTTTGGTCTATGATTTGTTATCAAGAGGAAGCCTTGAAGAGAACCTTCATGGTAATAAGAAAAATCCACTTGTGTTTGGTTGGAATGAGAGATATAAGGTAGCAATGGGTGTTGCTGAGGCTTTGGAGTATCTGCACGACAGTGATGGCCAACCTGTGATCCATCGGGATGTAAAATCATCAAATATATTATTATCTGAGGATTTTGAACCACAGCTCTCTGACTTTGGACTTGCTACATGGGCCTCAACCTCATCACCATATATAGTCTGCACAGATGTTGCTGGAACCTTCGGTTACTTGGCTCCTGAATACTTCATGTATGGTAAAGTAAATGATAAGATTGATGTCTATGCATTTGGTGTCGTACTTCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTAGTGATTACCCCAAAGGTCAAGAAAGCCTTGTGATGTGGGCAAGTCCAATTCTTAATAGTGGGAAGGTGTCACAGTTGTTAGATCCTAGTTTGGGTGATAACTATGATCATGAAGAGATGGAAAGGATGGTCTTAGCAGCCACACTTTGTATCAGACGTGCTCCAAAAGCTAGACCTCATATGAGCCGCATCTCAAAGCTCCTTGAAGGTGATGCTGATGTAATCAAGTGGGCAAGGCTAGAAGTTAATGCATTGGAAGCACCAGAAATGCTAGATGATGAAGCTTGCCCACCTTCTAATCTACAGTCACATCTTAATCTTGCACTGCTTGATGTGGAGGATGACTCGCTCTCCATGTGCAGTGTTGAGCAGAATGTCTCCTTGGAAGACTACTTGAGAGGCAGGTGGAGCCGCTCATCAAGCTTTGATTGA 2193 0.4277 MLQMGTAGEATDGSSGGRTVVVGVKMDSHSRELLTWAMVKVAQPGDVVVALHVLEIVNRDGKSSLFSVVKAFDSVLAVYEGFCNLKQVDLKLKICRGSSVRTILVREANAYSATHVIVGTPRGLHKIRPSTSVAKYCAKKLSKDCWVLAVNNGKVVFKRDGSPANRADLKGFDLDQRNGLLGSIHWTLSKSSKVLNDEGSGQISDHSLAKVFMDSAEVNGKKSCFICASTPALPESSCNSSTEESSGDVSNENNSVAIVPVPELKPGWPLLHKTILSERQSTERSLLRQISVVQWAMRLPSRNISYAANHDLKESNCDRDKDQFLALDSKSGALVPVDAEIGTASSPERNSRSIPKELEGLHEKYSSTCRLFKYQELVSATSNFLPENLIGKGGSSRVYRGCLPDGKELAVKILKPSDDVLKEFVLEIEIITTLHHKNIISLVGFCFEDGNLLLVYDLLSRGSLEENLHGNKKNPLVFGWNERYKVAMGVAEALEYLHDSDGQPVIHRDVKSSNILLSEDFEPQLSDFGLATWASTSSPYIVCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISSDYPKGQESLVMWASPILNSGKVSQLLDPSLGDNYDHEEMERMVLAATLCIRRAPKARPHMSRISKLLEGDADVIKWARLEVNALEAPEMLDDEACPPSNLQSHLNLALLDVEDDSLSMCSVEQNVSLEDYLRGRWSRSSSFD 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3221g00022 730 ProSitePatterns Protein kinases ATP-binding region signature. 390 412 IPR017441 GO:0005524
Gabi3221g00022 730 Gene3D Transferase(Phosphotransferase) domain 1 459 667 - -
Gabi3221g00022 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Gabi3221g00022 730 SMART serkin_6 384 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3221g00022 730 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 353 458 - -
Gabi3221g00022 730 SUPERFAMILY Protein kinase-like (PK-like) 365 657 IPR011009 -
Gabi3221g00022 730 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 147 - -
Gabi3221g00022 730 ProSiteProfiles Protein kinase domain profile. 384 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3221g00022 730 Gene3D HUPs 17 152 IPR014729 -
Gabi3221g00022 730 FunFam Putative receptor-like serine/threonine-protein kinase 459 671 - -
Gabi3221g00022 730 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 17 151 - -
Gabi3221g00022 730 Pfam Universal stress protein family 18 147 IPR006016 -
Gabi3221g00022 730 Gene3D Phosphorylase Kinase; domain 1 348 458 - -
Gabi3221g00022 730 PANTHER OS08G0249100 PROTEIN 73 666 IPR046958 -
Gabi3221g00022 730 Pfam Protein kinase domain 388 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3221g00022 730 CDD USP_Like 19 147 - -
Gabi3221g00022 730 MobiDBLite consensus disorder prediction 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3221g00022 Gabi-Chr3221 226328 230388 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3221g00022 290 651 Trihelix Transcription Factor Family AT1G68690 40.000 7.28e-76 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi3221g00022 Pkinase 2.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3221g00022 - - pcin:129303222 1094.34