Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3221g00021 ATGCTGCAAATGGGCACCGCCGGAGAAGCCACCGACGGAAGCTCCGGTGGCCGGACGGTGGTAGTGGGGGTGAAGATGGACTCTCACAGCAGAGAGTTGCTCACTTGGGCTATGGTCAAAGTTGCTCAGCCTGGTGATGTTGTGGTTGCTCTTCATGTTCTTGGTAATGATGAAATTGTGAACCGGGATGGAAAATCGTCTCTGTTTTCGGTCGTCAAAGCGTTTGACTCTGTTCTTGCTGTTTATGAAGGATTCTGCAATTTAAAACAGGTTGATCTGAAGCTCAAAATTTGCCGGGGTTCATCGGTGAGGACAATTCTGGTTCGAGAAGCAAATGCTTATTCTGCAACTCATGTTATAGTTGGAACACCTCGAGGTCTTCATAAAATCCGGCCATCTACTTCTGTAGCTAAGTACTGTGCTAAGAAGTTATCCAAGGATTGTTGGGTTCTTGCTGTTAATAATGGGAAAGTTGTGTTCAAGAGAGATGGCTCACCAGCAAATCGTGCTGACTTAAAAGGATTTGATCTGGATCAAAGAAATGGGTTGCTCGGTTCGATTCACTGGACACTCAGCAAGAGTTCAAAAGTACTAAATGATGAGGGTAGTGGTCAAATTTCAGATCACAGCTTAGCTAAGGTTTTTATGGATTCTGCAGAAGTCAATGGAAAAAAGAGTTGCTTTATTTGTGCTTCAACCCCAGCATTGCCAGAATCATCTTGTAACTCATCTACAGAAGAGTCTTCTGGTGATGTTAGTAATGAGAATAACTCTGTGGCTATAGTACCTGTACCTGAGTTGAAACCAGGTTGGCCTCTACTACACAAGACAATTTTATCAGAGAGGCAATCTACTGAAAGATCATTGTTGCGCCAGATCTCTGTGGTTCAGTGGGCAATGCGGTTGCCCTCTAGAAATATTTCATATGCTGCAAATCATGACCTCAAAGAAAGCAATTGTGACCGAGATAAAGATCAATTTTTGGCTCTAGATAGCAAAAGTGGCGCTCTTGTTCCAGTGGATGCTGAAATAGGGACTGCTTCTTCGCCTGAACGTAATTCAAGAAGCATTCCTAAAGAATTGGAGGGCCTTCATGAGAAATACTCATCGACTTGCAGATTGTTCAAGTACCAAGAACTTGTATCAGCAACATCAAATTTCTTGCCTGAAAATTTGATTGGGAAAGGAGGAAGTAGTCGGGTTTATAGAGGATGCCTTCCTGATGGCAAGGAACTTGCTGTTAAGATCTTAAAGCCTTCTGATGATGTTTTGAAGGAGTTTGTTCTAGAAATAGAAATTATCACTACCTTGCATCACAAAAACATTATTTCCCTCGTTGGGTTTTGTTTTGAAGATGGCAATCTTCTTTTGGTCTATGATTTGTTATCAAGAGGAAGCCTTGAAGAGAACCTTCATGGTAATAAGAAAAATCCACTTGTGTTTGGTTGGAATGAGAGATATAAGGTAGCAATGGGTGTTGCTGAGGCTTTGGAGTATCTGCACGACAGTGATGGCCAACCTGTGATCCATCGGGATGTAAAATCATCAAATATATTATTATCTGAGGATTTTGAACCACAGCTCTCTGACTTTGGACTTGCTACATGGGCCTCAACCTCATCACCATATATAGTCTGCACAGATGTTGCTGGAACCTTCGGTTACTTGGCTCCTGAATACTTCATGTATGGTAAAGTAAATGATAAGATTGATGTCTATGCATTTGGTGTCGTACTTCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTAGTGATTACCCCAAAGGTCAAGAAAGCCTTGTGATGTGGGCAAGTCCAATTCTTAATAGTGGGAAGGTGTCACAGTTGTTAGATCCTAGTTTGGGTGATAACTATGATCATGAAGAGATGGAAAGGATGGTCTTAGCAGCCACACTTTGTATCAGACGTGCTCCAAAAGCTAGACCTCATATGAGCCGCATCTCAAAGCTCCTTGAAGGTGATGCTGATGTAATCAAGTGGGCAAGGCTAGAAGTTAATGCATTGGAAGCACCAGAAATGCTAGATGATGAAGCTTGCCCACCTTCTAATCTACAGTCACATCTTAATCTTGCACTGCTTGATGTGGAGGATGACTCGCTCTCCATGTGCAGTGTTGAGCAGAATGTCTCCTTGGAAGACTACTTGAGAGGCAGGTGGAGCCGCTCATCAAGCTTTGATTGA 2202 0.4273 MLQMGTAGEATDGSSGGRTVVVGVKMDSHSRELLTWAMVKVAQPGDVVVALHVLGNDEIVNRDGKSSLFSVVKAFDSVLAVYEGFCNLKQVDLKLKICRGSSVRTILVREANAYSATHVIVGTPRGLHKIRPSTSVAKYCAKKLSKDCWVLAVNNGKVVFKRDGSPANRADLKGFDLDQRNGLLGSIHWTLSKSSKVLNDEGSGQISDHSLAKVFMDSAEVNGKKSCFICASTPALPESSCNSSTEESSGDVSNENNSVAIVPVPELKPGWPLLHKTILSERQSTERSLLRQISVVQWAMRLPSRNISYAANHDLKESNCDRDKDQFLALDSKSGALVPVDAEIGTASSPERNSRSIPKELEGLHEKYSSTCRLFKYQELVSATSNFLPENLIGKGGSSRVYRGCLPDGKELAVKILKPSDDVLKEFVLEIEIITTLHHKNIISLVGFCFEDGNLLLVYDLLSRGSLEENLHGNKKNPLVFGWNERYKVAMGVAEALEYLHDSDGQPVIHRDVKSSNILLSEDFEPQLSDFGLATWASTSSPYIVCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISSDYPKGQESLVMWASPILNSGKVSQLLDPSLGDNYDHEEMERMVLAATLCIRRAPKARPHMSRISKLLEGDADVIKWARLEVNALEAPEMLDDEACPPSNLQSHLNLALLDVEDDSLSMCSVEQNVSLEDYLRGRWSRSSSFD 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3221g00021 733 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 150 - -
Gabi3221g00021 733 Gene3D Transferase(Phosphotransferase) domain 1 462 670 - -
Gabi3221g00021 733 Pfam Protein kinase domain 391 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3221g00021 733 CDD USP_Like 19 150 - -
Gabi3221g00021 733 ProSitePatterns Protein kinases ATP-binding region signature. 393 415 IPR017441 GO:0005524
Gabi3221g00021 733 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Gabi3221g00021 733 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 356 461 - -
Gabi3221g00021 733 Gene3D HUPs 17 155 IPR014729 -
Gabi3221g00021 733 SMART serkin_6 387 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3221g00021 733 FunFam Putative receptor-like serine/threonine-protein kinase 462 674 - -
Gabi3221g00021 733 Pfam Universal stress protein family 18 150 IPR006016 -
Gabi3221g00021 733 PANTHER OS08G0249100 PROTEIN 76 669 IPR046958 -
Gabi3221g00021 733 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 17 154 - -
Gabi3221g00021 733 Gene3D Phosphorylase Kinase; domain 1 351 461 - -
Gabi3221g00021 733 ProSiteProfiles Protein kinase domain profile. 387 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3221g00021 733 MobiDBLite consensus disorder prediction 236 256 - -
Gabi3221g00021 733 SUPERFAMILY Protein kinase-like (PK-like) 368 660 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3221g00021 Gabi-Chr3221 226328 230388 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3221g00021 293 657 Trihelix Transcription Factor Family AT1G68690 39.678 9.48e-76 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi3221g00021 Pkinase 2.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3221g00021 - - pcin:129303222 1104.74