Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3221g00016 ATGTTGAAGACGAATGCATTTCACGGCGCGAACGTGTTCATGTCGCGGAACCTCGTGCCGCCCGAAATCTTCGACGCGCTCCATGACGCCGTCAAGGATAACGGCGCCGAACTCCACCTTTGTTGCGATCCTTCACGCAATGGCCCCAATGATTACCACATCATTTCTTCCAATAAACACGTAATTCCTCAATTCCACCCTCCTCTTTTGCGTTTTATTTATTTATTGTTGATTTCGTTCTCCGTTTTGCAGGAGAAGTTTGAGGATCTTAAAGCCAAGGGTTGTAAATTGCTTGGTCCTAGATGTGTTCTTTCATGTGCTAAAGAGCATAGGCCTCTGCCTAAACAGGGATTCACTTGTTGCCTTGCCATGGATGGTGTCAAAGTACTTGCATCTGGCTTTGGCACAGTTGAGAAGGTTAAGATAGAAGAGTTTGTGATTGAAATGGGGGGAGTTCTACACACGAAAGCATCACTGGATTTGAACTTTGTCATTGTGAAAAATGTTTTAGCTGCAAAGTACAAGTGGGCATTGAATATCCTGAAGAAACCAATAGTCACTTATGAATGGTTAAAGCAATGCTCAGAGGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCCGGGTTAGAGATTTGTGTTACTGGAATCCCAGCAGATACGCGCGGAGAAATGAAGGAGCTTATTTTACAAAATGGTGGAAAATATTCTGCGGAACTGACAAAGAAGTGCACACATTTGATTTCTAACGCTCCTGAAGGTGCCAAACATAAGGTGGCAAAGTGTTGGGGCCACATTCATGTTGTGTCAACGAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTGAATGAGGAATCATACCCTGTTCAGAATGGATCTGTATCTTCACATAAAGTAACTAGGGACTTAAATGTGCAACACAGCCAAGAAAAGGATATTGGGAAATTGCAATCTGAGGCATCCTCAGGAGCTACAGATTTAAATATGCCAGTTTTTTCTAATGCTGAGTTTATGGATATAGATCTAGAAGCTACACAGCCAGAACACATATCTTCCTCAAATGCTCCTTTATTTGCTAAAGAGGCAGATGCTGAAGCACCTCCAGTGCAGACCAGCAATGAATTGAACTTTGATGGTGCTGTTGCCAATGATTCTGAAACTGATGATAATGACCTGTACTTATCAGAGTGCCGAATATCACTTGTTGGCTTCGAAGCTTCTGAAATGCGGAAACTAGTTAGTATGGTGCGTAAAGGTGGAGGCTCCCGATATGTGTCTCTTAATGACAGGTTGACGCACATAATAATTGGGAATCCTACAGAAACGGAAAAAAAAGATGTAAGGAGTCTTGCTGCTTTGGGTGTCATTTATGTTGTTAAAACCTCATGGCTTGAAGATTGTGACCGTGAGAAGAAAGAAGTTCCTGTTCTTAGAAGACACATAGCGCTTGATCTAATTCTTCCAAAAGCAAGCTTGGTAAATGGAGCAGTAACAAGCATTATGTCCATGGATCAAGGTAAAAGATCTGGCTTTCATCAAAGTTTACAGACTGATCAGGTGGTGGGTATCACAGACTTCGGAGTTGTAATGCCAAAATCTTTGGAGAAAGACAAAGAAGAGAAACTGGGTATTGGTACAAACGTTCACACATTCAATAAAGCAACTGGCAGAGCTATGGCGGAAAATCAAATTCCTGATAATAAATTGAGGGTACAAAAGATGACACAATATGACTCCAGCGTCCAATATGTGAAGTCAACAACTGTTTTCAGAGGGAAAATATTTTGTTTCTCAAATTTATTTCCTGAAGAAAGGAGAGCTGAGATTGTTCAATGGATAAGTCAAGGAGGAGGAGAGGTAGTAAGTCGGCAAACAAAACAGAGTGTCCCTTATATTATCGAGTGTCATGGTGTAACACCCAGGTTGACAGGTGATTCTGAAAGCATACATATTTCCAGTCATTGGATACGATCTTGTTTGGAGGCTGGGTCGTTGCTGGAAGTTGACAGTCATATTCTTTATTCTCCACTTCCCTGCCGTGTTCCCTTGCCTGGGTTTGAAAGCTTCCGGTTTTGTGTTTCACAATATGAGGAGAAAGATAGAATTCTACTTAGGAACCTGTGTTTTGTTCTGGGAGCTAAATTTGTGGAGAAGTTGACTAAGAAGGTCACCCATTTAGTATGTAAATTCACCAATGGGCCCAAGTACAAGGCTGCTTGTAAGTGGGGGATCCGGTCAGTTACATCTGAATGGATCTTTGAATGTGTCAAACAGAATGGAGTTGTTGCCATTGATCGATTTTTACCAAAAGAGGTCACTGCTCAAGACCAAGAGGCAGGAATTTGCACTGTGAGTCAAAATCCTACCCAGGCTGTTCGAATGATAAGTGACATGCCCTCCCAGCTTCCAAGTCAAACACAAAATCTGAGAAACATGGCAAATAAAAACATAGGTAGTGGAGTTGACAATCATGGGACTGATTCTAAAATAACAAGTATTTACAGCAAAAAGGCGAGGCCCGTGGAAGAACCTGGTCTACATGAAAAGGTGCCTTCTGCCGTAAATTCAGGTATTCATGTCCATGACATGAACTTTTCTGAAAACAATATGCTTAAAGATGCTGGGGAAGTTTCTCATGTTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACAAGCAAGATGCATGATCAGAGGTCGCCTAGGAGGACAGGGTGTGAGGGAACTATTTACTCATCTGATTGTTCAGCCCTTGGTGAAGACAATTCAAATCCTCATACTGTCTTCGGATTATCTAAAAACTGGTTAAACAGAAGTGGCAGAAAAGACAATAATGGTGAGGCTTCTCAAGACGGAAGAGCAGGAATCTATGATGGTTTTAGTGAAACACAAACAGAATCTCAGGTTGTTAGTTATGAAGAAGATTTATCAGGAAGGCAAATGCTTATAGATAGAGTCCGAACTCGAAGTAGCATGCACTGA 3009 0.4181 MLKTNAFHGANVFMSRNLVPPEIFDALHDAVKDNGAELHLCCDPSRNGPNDYHIISSNKHVIPQFHPPLLRFIYLLLISFSVLQEKFEDLKAKGCKLLGPRCVLSCAKEHRPLPKQGFTCCLAMDGVKVLASGFGTVEKVKIEEFVIEMGGVLHTKASLDLNFVIVKNVLAAKYKWALNILKKPIVTYEWLKQCSEEHRVVPQESYKVLPFSGLEICVTGIPADTRGEMKELILQNGGKYSAELTKKCTHLISNAPEGAKHKVAKCWGHIHVVSTKWFDQSIARRACLNEESYPVQNGSVSSHKVTRDLNVQHSQEKDIGKLQSEASSGATDLNMPVFSNAEFMDIDLEATQPEHISSSNAPLFAKEADAEAPPVQTSNELNFDGAVANDSETDDNDLYLSECRISLVGFEASEMRKLVSMVRKGGGSRYVSLNDRLTHIIIGNPTETEKKDVRSLAALGVIYVVKTSWLEDCDREKKEVPVLRRHIALDLILPKASLVNGAVTSIMSMDQGKRSGFHQSLQTDQVVGITDFGVVMPKSLEKDKEEKLGIGTNVHTFNKATGRAMAENQIPDNKLRVQKMTQYDSSVQYVKSTTVFRGKIFCFSNLFPEERRAEIVQWISQGGGEVVSRQTKQSVPYIIECHGVTPRLTGDSESIHISSHWIRSCLEAGSLLEVDSHILYSPLPCRVPLPGFESFRFCVSQYEEKDRILLRNLCFVLGAKFVEKLTKKVTHLVCKFTNGPKYKAACKWGIRSVTSEWIFECVKQNGVVAIDRFLPKEVTAQDQEAGICTVSQNPTQAVRMISDMPSQLPSQTQNLRNMANKNIGSGVDNHGTDSKITSIYSKKARPVEEPGLHEKVPSAVNSGIHVHDMNFSENNMLKDAGEVSHVVPDVAAAIEDLLEQTSKMHDQRSPRRTGCEGTIYSSDCSALGEDNSNPHTVFGLSKNWLNRSGRKDNNGEASQDGRAGIYDGFSETQTESQVVSYEEDLSGRQMLIDRVRTRSSMH 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3221g00016 1002 CDD BRCT_TopBP1_rpt2_like 690 765 - -
Gabi3221g00016 1002 Gene3D BRCT domain 210 296 IPR036420 -
Gabi3221g00016 1002 ProSiteProfiles BRCT domain profile. 124 208 IPR001357 -
Gabi3221g00016 1002 FunFam Transcription coactivator 121 209 - -
Gabi3221g00016 1002 FunFam DNA topoisomerase II binding protein 1 211 303 - -
Gabi3221g00016 1002 SUPERFAMILY BRCT domain 688 776 IPR036420 -
Gabi3221g00016 1002 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 9 1000 - -
Gabi3221g00016 1002 ProSiteProfiles BRCT domain profile. 206 295 IPR001357 -
Gabi3221g00016 1002 ProSiteProfiles BRCT domain profile. 395 487 IPR001357 -
Gabi3221g00016 1002 CDD BRCT 127 194 - -
Gabi3221g00016 1002 Pfam BRCT domain, a BRCA1 C-terminus domain 593 676 IPR001357 -
Gabi3221g00016 1002 SUPERFAMILY BRCT domain 594 681 IPR036420 -
Gabi3221g00016 1002 SUPERFAMILY BRCT domain 210 296 IPR036420 -
Gabi3221g00016 1002 ProSiteProfiles BRCT domain profile. 591 679 IPR001357 -
Gabi3221g00016 1002 Gene3D BRCT domain 384 484 IPR036420 -
Gabi3221g00016 1002 SUPERFAMILY BRCT domain 395 481 IPR036420 -
Gabi3221g00016 1002 CDD BRCT_TopBP1_rpt2_like 210 285 - -
Gabi3221g00016 1002 Gene3D BRCT domain 687 779 IPR036420 -
Gabi3221g00016 1002 Pfam BRCA1 C Terminus (BRCT) domain 397 473 IPR001357 -
Gabi3221g00016 1002 Pfam BRCA1 C Terminus (BRCT) domain 126 194 IPR001357 -
Gabi3221g00016 1002 FunFam Transcription coactivator 588 685 - -
Gabi3221g00016 1002 Pfam twin BRCT domain 696 757 IPR001357 -
Gabi3221g00016 1002 Pfam twin BRCT domain 214 277 IPR001357 -
Gabi3221g00016 1002 ProSiteProfiles BRCT domain profile. 692 775 IPR001357 -
Gabi3221g00016 1002 SMART BRCT_7 397 477 IPR001357 -
Gabi3221g00016 1002 SMART BRCT_7 689 765 IPR001357 -
Gabi3221g00016 1002 SMART BRCT_7 208 285 IPR001357 -
Gabi3221g00016 1002 SMART BRCT_7 121 198 IPR001357 -
Gabi3221g00016 1002 SMART BRCT_7 593 669 IPR001357 -
Gabi3221g00016 1002 SUPERFAMILY BRCT domain 85 207 IPR036420 -
Gabi3221g00016 1002 Gene3D BRCT domain 122 209 IPR036420 -
Gabi3221g00016 1002 FunFam Transcription coactivator 377 487 - -
Gabi3221g00016 1002 Gene3D BRCT domain 589 685 IPR036420 -
Gabi3221g00016 1002 Gene3D BRCT domain 77 118 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3221g00016 Gabi-Chr3221 120943 143501 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3221g00016 1 1001 Core DNA Replication Machinery Family AT1G77320 48.433 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3221g00016 K10728 - gmx:100804966 1468.37