Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3221g00013 ATGTTGAAGACGAATGCATTTCACGGCGCGAACGTGTTCATGTCGCGGAACCTCGTGCCGCCCGAAATCTTCGACGCGCTCCATGACGCCGTCAAGGATAACGGCGCCGAACTCCACCTTTGTTGCGATCCTTCACGCAATGGCCCCAATGATTACCACATCATTTCTTCCAATAAACACGAGAAGTTTGAGGATCTTAAAGCCAAGGGTTGTAAATTGCTTGGTCCTAGATGTGTTCTTTCATGTGCTAAAGAGCATAGGCCTCTGCCTAAACAGGGATTCACTTGTTGCCTTGCCATGGATGGTGTCAAAGTACTTGCATCTGGCTTTGGCACAGTTGAGAAGGTTAAGATAGAAGAGTTTGTGATTGAAATGGGGGGAGTTCTACACACGAAAGCATCACTGGATTTGAACTTTGTCATTGTGAAAAATGTTTTAGCTGCAAAGTACAAGTGGGCATTGAATATCCTGAAGAAACCAATAGTCACTTATGAATGGTTAAAGCAATGCTCAGAGGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCCGGGTTAGAGATTTGTGTTACTGGAATCCCAGCAGATACGCGCGGAGAAATGAAGGAGCTTATTTTACAAAATGGTGGAAAATATTCTGCGGAACTGACAAAGAAGTGCACACATTTGATTTCTAACGCTCCTGAAGGTGCCAAACATAAGGTGGCAAAGTGTTGGGGCCACATTCATGTTGTGTCAACGAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTGAATGAGGAATCATACCCTGTTCAGAATGGATCTGTATCTTCACATAAAGTAACTAGGGACTTAAATGTGCAACACAGCCAAGAAAAGGATATTGGGAAATTGCAATCTGAGGCATCCTCAGGAGCTACAGATTTAAATATGCCAGTTTTTTCTAATGCTGAGTTTATGGATATAGATCTAGAAGCTACACAGCCAGAACACATATCTTCCTCAAATGCTCCTTTATTTGCTAAAGAGGCAGATGCTGAAGCACCTCCAGTGCAGACCAGCAATGAATTGAACTTTGATGGTGCTGTTGCCAATGATTCTGAAACTGATGATAATGACCTGTACTTATCAGAGTGCCGAATATCACTTGTTGGCTTCGAAGCTTCTGAAATGCGGAAACTAGTTAGTATGGTGCGTAAAGGTGGAGGCTCCCGATATGTGTCTCTTAATGACAGGTTGACGCACATAATAATTGGGAATCCTACAGAAACGGAAAAAAAAGATGTAAGGAGTCTTGCTGCTTTGGGTGTCATTTATGTTGTTAAAACCTCATGGCTTGAAGATTGTGACCGTGAGAAGAAAGAAGTTCCTGTTCTTAGAAGACACATAGCGCTTGATCTAATTCTTCCAAAAGCAAGCTTGGTAAATGGAGCAGTAACAAGCATTATGTCCATGGATCAAGGTAAAAGATCTGGCTTTCATCAAAGTTTACAGACTGATCAGGTGGTGGGTATCACAGACTTCGGAGTTGTAATGCCAAAATCTTTGGAGAAAGACAAAGAAGAGAAACTGGGTATTGGTACAAACGTTCACACATTCAATAAAGCAACTGGCAGAGCTATGGCGGAAAATCAAATTCCTGATAATAAATTGAGGGTACAAAAGATGACACAATATGACTCCAGCGTCCAATATGTGAAGTCAACAACTGTTTTCAGAGGGAAAATATTTTGTTTCTCAAATTTATTTCCTGAAGAAAGGAGAGCTGAGATTGTTCAATGGATAAGTCAAGGAGGAGGAGAGGTAGTAAGTCGGCAAACAAAACAGAGTGTCCCTTATATTATCGAGTGTCATGGTGTAACACCCAGGTTGACAGGTGATTCTGAAAGCATACATATTTCCAGTCATTGGATACGATCTTGTTTGGAGGCTGGGTCGTTGCTGGAAGTTGACAGTCATATTCTTTATTCTCCACTTCCCTGCCGTGTTCCCTTGCCTGGGTTTGAAAGCTTCCGGTTTTGTGTTTCACAATATGAGGAGAAAGATAGAATTCTACTTAGGAACCTGTGTTTTGTTCTGGGAGCTAAATTTGTGGAGAAGTTGACTAAGAAGGTCACCCATTTAGTATGTAAATTCACCAATGGGCCCAAGTACAAGGCTGCTTGTAAGTGGGGGATCCGGTCAGTTACATCTGAATGGATCTTTGAATGTGTCAAACAGAATGGAGTTGTTGCCATTGATCGATTTTTACCAAAAGAGGTCACTGCTCAAGACCAAGAGGCAGGAATTTGCACTGTGAGTCAAAATCCTACCCAGGCTGTTCGAATGATAAGTGACATGCCCTCCCAGCTTCCAAGTCAAACACAAAATCTGAGAAACATGGCAAATAAAAACATAGGTAGTGGAGTTGACAATCATGGGACTGATTCTAAAATAACAAGTATTTACAGCAAAAAGGCGAGGCCCGTGGAAGAACCTGGTCTACATGAAAAGGTGCCTTCTGCCGTAAATTCAGGTATTCATGTCCATGACATGAACTTTTCTGAAAACAATATGCTTAAAGATGCTGGGGAAGTTTCTCATGTTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACAAGCAAGATGCATGATCAGAGGTCGCCTAGGAGGACAGGGTGTGAGGGAACTATTTACTCATCTGATTGTTCAGCCCTTGGTGAAGACAATTCAAATCCTCATACTGTCTTCGGATTATCTAAAAACTGGTTAAACAGAAGTGGCAGAAAAGACAATAATGGTGAGGCTTCTCAAGACGGAAGAGCAGGAATCTATGATGGTTTTAGTGAAACACAAACAGAATCTCAGGTTGTTAGTTATGAAGAAGATTTATCAGGAAGGCAAATGCTTATAGATAGAGTCCGAACTCGAAGTAGCATGCACTGA 2937 0.4195 MLKTNAFHGANVFMSRNLVPPEIFDALHDAVKDNGAELHLCCDPSRNGPNDYHIISSNKHEKFEDLKAKGCKLLGPRCVLSCAKEHRPLPKQGFTCCLAMDGVKVLASGFGTVEKVKIEEFVIEMGGVLHTKASLDLNFVIVKNVLAAKYKWALNILKKPIVTYEWLKQCSEEHRVVPQESYKVLPFSGLEICVTGIPADTRGEMKELILQNGGKYSAELTKKCTHLISNAPEGAKHKVAKCWGHIHVVSTKWFDQSIARRACLNEESYPVQNGSVSSHKVTRDLNVQHSQEKDIGKLQSEASSGATDLNMPVFSNAEFMDIDLEATQPEHISSSNAPLFAKEADAEAPPVQTSNELNFDGAVANDSETDDNDLYLSECRISLVGFEASEMRKLVSMVRKGGGSRYVSLNDRLTHIIIGNPTETEKKDVRSLAALGVIYVVKTSWLEDCDREKKEVPVLRRHIALDLILPKASLVNGAVTSIMSMDQGKRSGFHQSLQTDQVVGITDFGVVMPKSLEKDKEEKLGIGTNVHTFNKATGRAMAENQIPDNKLRVQKMTQYDSSVQYVKSTTVFRGKIFCFSNLFPEERRAEIVQWISQGGGEVVSRQTKQSVPYIIECHGVTPRLTGDSESIHISSHWIRSCLEAGSLLEVDSHILYSPLPCRVPLPGFESFRFCVSQYEEKDRILLRNLCFVLGAKFVEKLTKKVTHLVCKFTNGPKYKAACKWGIRSVTSEWIFECVKQNGVVAIDRFLPKEVTAQDQEAGICTVSQNPTQAVRMISDMPSQLPSQTQNLRNMANKNIGSGVDNHGTDSKITSIYSKKARPVEEPGLHEKVPSAVNSGIHVHDMNFSENNMLKDAGEVSHVVPDVAAAIEDLLEQTSKMHDQRSPRRTGCEGTIYSSDCSALGEDNSNPHTVFGLSKNWLNRSGRKDNNGEASQDGRAGIYDGFSETQTESQVVSYEEDLSGRQMLIDRVRTRSSMH 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3221g00013 978 SUPERFAMILY BRCT domain 664 752 IPR036420 -
Gabi3221g00013 978 FunFam Transcription coactivator 97 185 - -
Gabi3221g00013 978 CDD BRCT_TopBP1_rpt2_like 666 741 - -
Gabi3221g00013 978 ProSiteProfiles BRCT domain profile. 567 655 IPR001357 -
Gabi3221g00013 978 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 9 976 - -
Gabi3221g00013 978 FunFam Transcription coactivator 564 661 - -
Gabi3221g00013 978 CDD BRCT 103 170 - -
Gabi3221g00013 978 ProSiteProfiles BRCT domain profile. 668 751 IPR001357 -
Gabi3221g00013 978 FunFam Transcription coactivator 353 463 - -
Gabi3221g00013 978 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Gabi3221g00013 978 Gene3D BRCT domain 98 185 IPR036420 -
Gabi3221g00013 978 CDD BRCT_TopBP1_rpt2_like 186 261 - -
Gabi3221g00013 978 SUPERFAMILY BRCT domain 570 657 IPR036420 -
Gabi3221g00013 978 ProSiteProfiles BRCT domain profile. 182 271 IPR001357 -
Gabi3221g00013 978 ProSiteProfiles BRCT domain profile. 371 463 IPR001357 -
Gabi3221g00013 978 Pfam BRCT domain, a BRCA1 C-terminus domain 569 652 IPR001357 -
Gabi3221g00013 978 Gene3D BRCT domain 663 755 IPR036420 -
Gabi3221g00013 978 SUPERFAMILY BRCT domain 59 183 IPR036420 -
Gabi3221g00013 978 Pfam twin BRCT domain 672 733 IPR001357 -
Gabi3221g00013 978 Pfam twin BRCT domain 190 253 IPR001357 -
Gabi3221g00013 978 Gene3D BRCT domain 36 94 IPR036420 -
Gabi3221g00013 978 SUPERFAMILY BRCT domain 186 272 IPR036420 -
Gabi3221g00013 978 SMART BRCT_7 184 261 IPR001357 -
Gabi3221g00013 978 SMART BRCT_7 665 741 IPR001357 -
Gabi3221g00013 978 SMART BRCT_7 569 645 IPR001357 -
Gabi3221g00013 978 SMART BRCT_7 373 453 IPR001357 -
Gabi3221g00013 978 SMART BRCT_7 97 174 IPR001357 -
Gabi3221g00013 978 Pfam BRCA1 C Terminus (BRCT) domain 102 170 IPR001357 -
Gabi3221g00013 978 Pfam BRCA1 C Terminus (BRCT) domain 373 449 IPR001357 -
Gabi3221g00013 978 Gene3D BRCT domain 565 661 IPR036420 -
Gabi3221g00013 978 Gene3D BRCT domain 186 272 IPR036420 -
Gabi3221g00013 978 FunFam DNA topoisomerase II binding protein 1 187 279 - -
Gabi3221g00013 978 Gene3D BRCT domain 360 460 IPR036420 -
Gabi3221g00013 978 SUPERFAMILY BRCT domain 371 457 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3221g00013 Gabi-Chr3221 120943 143501 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3221g00013 1 977 Core DNA Replication Machinery Family AT1G77320 49.270 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3221g00013 K10728 - gmx:100804966 1481.85