Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3221g00011 ATGTTCTTCCTCTTCACCATTTTCAAAGCTGATGTTGCATCTTCCTCATGTCCCTTGGATCTCAGTTATGTTGAGACCTTTCCATGGGACACTTCATCCTGCAGAGATCCAATTGATGCACAACACTGTTGCCAAGCTCTGCTCAGCCTCTTTGGCATAGGGCTTGCCCAACACCTCAAAGAAACTTCCTTGTTTCAACTTCCTGATGAAAACACTTCCTCCACTTGCTTATCTGATTTCAAAGTCAAGCTTTCATCTATGTCAATTCAGCCATCTTTGGTCCCTTCTTGCTTCCATAACTCAACCCAGTTTGTTACTAACTCTTCTAGTTGTGCAGGTATAATAACTACCAAAGATTGGAAGCAAAAAGTAGGTACGTTGAGTCCACTAGACACTTCTTGTAATGGGGACATGAAGGATCAAACTCGATGCAGTATTTGCACTGATGCTGGCTTTAAAGTTACTTCTCAGTTGACTAGTATTGATCCAAAAAATGCAACAAAGTGTTTTTATTTTACAATCTTATATGCTGCAGCTGTTGTTAATCAGTTTGGTCCTACAGATGTTGGCACAGCTAGTTGCATACTTGGCTTGCCACTGTCTATAAAAGGGTCATCACATAGAGAAGAAGTGTTGAAATTGGTTTTTGGGTTATTGGGTGCTCTTATTGGTGTTGTGCTTGCTTTTGTTCTGATAATTATGTATAGGAAGTGGGATAGGAGAAGGAAGGAGAATATTTATCACAGGTCAATTGAAAACAGTGTTAGGACCAGTGTTTTGCCTAATACTGGTGCGAAATGGTTTCATATATCAGAGCTTGATCGAGCAACAAATAAGTTTTCACAGAGGAATATGATTGGTCAAGGTGGTGATGGGGTTGTGTACAAAGGGACTCTTTCAGATGGCACTTTGGTTGCAGTTAAGGAGATTTCTGACTTGGAAACTAGAGGGGATGAAGAGTTTGGCTATGAAGTGGAGATCATAAGCAAAATAAAGCACAGGAATCTTCTTGCTCTTCGGGGTTGTTGTGTTACAAGTGATAATTTGAGAGGTAAGAGGAGGTTTCTAGTTTATGATTTTATGCCTAATGGCAGCCTCAGTTACCAATTGTCAATTGCTGGGGCTAATAGGCTAACATGGCCACAAAGGAAGAACATAATTCTTGATGTGGCTAAAGGGCTTGCTTATTTGCATTATGAAATCAAACCCCCAATTTATCACCGTGACATAAAGGCTACAAATATACTTCTGGATTCCAAAATGAAAGCTAAAGTTGCAGATTTTGGCTTGGCAAAGCAAGGTAGTGAAGGCCAATCTCATCTCACCACAAGGGTTGCTGGCACATATGGTTATTTGGCACCAGAGTATGCTCTATATGGGCAACTAACTGAGAAAAGTGATGTCTACAGTTTTGGTATTGTGATTCTTGAAATCATGAGTGGAAGAAAAGTGCTTGACACTTTGAATTCATCTGTGGTTTTAATCACTGATTGGGCATGGTCACTTGCAAAATCAGAAAAAGTGGAGGAAATTTTTGATCAGTCTATAAGAGAAGAAGGGCCAGAAAAAATTATGGAAAGGTTTGTTCTTGTTGGGATTCTTTGTGCTCATGCAATGGTGGCATTAAGGCCTACAATTGCTGAAGCCCTTAAGATGTTAGAGGGTGACATTGACATTCCCAAATTACCAGATAGGCCAGTTCCACTTGGTCATGAGTCGTTTCAATCTTCTTTGTTGTATGGTATGCAAAGAAGTGGAAGATCAACACCATATCTTTCATCTTATTCAACAAGTATGAGCACAATATAG 1809 0.3986 MFFLFTIFKADVASSSCPLDLSYVETFPWDTSSCRDPIDAQHCCQALLSLFGIGLAQHLKETSLFQLPDENTSSTCLSDFKVKLSSMSIQPSLVPSCFHNSTQFVTNSSSCAGIITTKDWKQKVGTLSPLDTSCNGDMKDQTRCSICTDAGFKVTSQLTSIDPKNATKCFYFTILYAAAVVNQFGPTDVGTASCILGLPLSIKGSSHREEVLKLVFGLLGALIGVVLAFVLIIMYRKWDRRRKENIYHRSIENSVRTSVLPNTGAKWFHISELDRATNKFSQRNMIGQGGDGVVYKGTLSDGTLVAVKEISDLETRGDEEFGYEVEIISKIKHRNLLALRGCCVTSDNLRGKRRFLVYDFMPNGSLSYQLSIAGANRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMKAKVADFGLAKQGSEGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDTLNSSVVLITDWAWSLAKSEKVEEIFDQSIREEGPEKIMERFVLVGILCAHAMVALRPTIAEALKMLEGDIDIPKLPDRPVPLGHESFQSSLLYGMQRSGRSTPYLSSYSTSMSTI 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3221g00011 602 Pfam SPARK 13 169 IPR043891 -
Gabi3221g00011 602 CDD STKc_IRAK 286 555 - -
Gabi3221g00011 602 SUPERFAMILY Protein kinase-like (PK-like) 265 577 IPR011009 -
Gabi3221g00011 602 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 361 561 - -
Gabi3221g00011 602 FunFam Receptor-like serine/threonine-protein kinase At4g25390 245 360 - -
Gabi3221g00011 602 SMART serkin_6 280 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3221g00011 602 Pfam Protein kinase domain 282 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3221g00011 602 ProSiteProfiles Protein kinase domain profile. 280 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3221g00011 602 Gene3D Phosphorylase Kinase; domain 1 241 360 - -
Gabi3221g00011 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Gabi3221g00011 602 PANTHER OS01G0750732 PROTEIN 37 566 - -
Gabi3221g00011 602 Gene3D Transferase(Phosphotransferase) domain 1 361 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3221g00011 Gabi-Chr3221 109917 111913 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3221g00011 10 575 Receptor kinase-like Gene Family AT1G11050 53.162 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Gabi3221g00011 Pkinase 5.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3221g00011 - - mtr:25482441 1006.13