Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3221g00005 ATGTCGACCCACAATCGTCGTTCGTCGTCGTTCTCTTCCTCCACGACGTCGTCCTTCGCAAAACGACACGCGTCGAAGACGACGACGACGTCGTCGGTGAAGGGAAAAGTTGTTCCTCCTTCACACATGGCTACGAAGAGAACACCTCTCACCAATCTCTCTAATCAAAAGAGCGTGACTCACGTTGCTTCGCGCAACTCGGGACCTTCCTCTACATTGGTGCCATGTTCAAATAAAACCGCCAAGGCAAAGAAAGAGCCTCCTCCATGTAACAGCAACAGCAACAGCATAGCAAGATCAACAATTTGCGGAAATGTTAAAACAAGCGCTGTTGTTCTTCCAAAGTCTTCTTCTTGCCCACGAAGAAAAAGAAGTGATGCTGCTGCTCCTGCTACTAAAACAGTTGCCAATGTCATTGTGCCTGTTGTTCCGAGCATCGTGGATGTTTCTCCTAGTAAGTCTGATGGGATGTCAACGTCATCTTCTTGTGATTCTATCAAGAGTCCTGAAGTTGAATACTTGGACAATATTGATGTTTCAGCTGTTGATTCAATTCAGAGAAAGATATCCAGCATTTTGAACATCTCTGATACTACAGAGCCAGCAGGCAGCAACATCTGCAGGAGAGACATAATTGTTGAGTTAAAAAGAGAGGGCAAAATTGCCAATATCGATAATAATTACCCGGATCCGCAGCTTTGTGCAACCTATGCTTGTGACATCTACAAGCACCTCCGTGCATCTGAGGCAAAGAAAAGGCCTTCCACAGACTTCATGGAGAGAATTCAGAAAGACATAAATGTCAGCATGCGCGCCATATTGATTGACTGGCTTGTGGAGGTGTCTGAGGAGTATCGGCTTGTACCTGATACATTGTATTTGTCAGTGAACTACATAGATCGGTATCTGTCGGGGAATGCTATGAATAGGCAAAGGTTACAATTACTTGGTGTTGCCTGCATGATGATTGCCTCTAAATACGAGGAGATTTGTGCACCTCAGGTGGAAGAATTTTGTTATATAACTGATAACACTTACTTGAAAGAAGAGGTTTTGCAAATGGAATCTGCTGTCTTGAATTATCTTAAGTTCGAAATGACAGCCCCAACAATTAAATGTTTCCTAAGACGATATATTCGTGCAGCTCAAGATGTCAATGAGGTCCCTTCACTACAACTAGAGTGCTTGACTAACTACATTGCCGAATTATCTCTCTTGGAATACAGTATGCTTTGTTATGCCCCATCACTTATAGCTGCTTCTGCAGTTTTCCTAGCCAAATTTATACTTATTCCTTCAAAGAAACCATGGAATTCCACGTTGCAGCATTACACCCTTTACAGGCCTTCTGATTTGTGTGGATGTGTAAAGGATCTCCATAGTCTTTGTTGCAACGGTCCTAATTCTAATTTACCTGCAGTACGAGAGAAATACAGTCAGCATAAGTACAAATATGTGGCGAAGAAGTACTTCCCTCCTTCAATACCTCAAGAAGTTTTCCAGAATTGA 1509 0.4288 MSTHNRRSSSFSSSTTSSFAKRHASKTTTTSSVKGKVVPPSHMATKRTPLTNLSNQKSVTHVASRNSGPSSTLVPCSNKTAKAKKEPPPCNSNSNSIARSTICGNVKTSAVVLPKSSSCPRRKRSDAAAPATKTVANVIVPVVPSIVDVSPSKSDGMSTSSSCDSIKSPEVEYLDNIDVSAVDSIQRKISSILNISDTTEPAGSNICRRDIIVELKREGKIANIDNNYPDPQLCATYACDIYKHLRASEAKKRPSTDFMERIQKDINVSMRAILIDWLVEVSEEYRLVPDTLYLSVNYIDRYLSGNAMNRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYLKEEVLQMESAVLNYLKFEMTAPTIKCFLRRYIRAAQDVNEVPSLQLECLTNYIAELSLLEYSMLCYAPSLIAASAVFLAKFILIPSKKPWNSTLQHYTLYRPSDLCGCVKDLHSLCCNGPNSNLPAVREKYSQHKYKYVAKKYFPPSIPQEVFQN 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3221g00005 502 PANTHER CYCLINS 164 480 IPR039361 -
Gabi3221g00005 502 MobiDBLite consensus disorder prediction 1 93 - -
Gabi3221g00005 502 CDD CYCLIN_AtCycA-like_rpt2 369 483 - -
Gabi3221g00005 502 Gene3D - 254 367 - -
Gabi3221g00005 502 ProSitePatterns Cyclins signature. 271 302 IPR006671 -
Gabi3221g00005 502 FunFam Mitotic cyclin 6 254 354 - -
Gabi3221g00005 502 SUPERFAMILY Cyclin-like 369 494 IPR036915 -
Gabi3221g00005 502 MobiDBLite consensus disorder prediction 45 78 - -
Gabi3221g00005 502 FunFam Cyclin A1 356 488 - -
Gabi3221g00005 502 MobiDBLite consensus disorder prediction 1 36 - -
Gabi3221g00005 502 SUPERFAMILY Cyclin-like 229 366 IPR036915 -
Gabi3221g00005 502 Pfam Cyclin, N-terminal domain 240 366 IPR006671 -
Gabi3221g00005 502 CDD CYCLIN_AtCycA_like_rpt1 230 365 - -
Gabi3221g00005 502 Gene3D - 240 488 - -
Gabi3221g00005 502 Pfam Cyclin, C-terminal domain 369 488 IPR004367 -
Gabi3221g00005 502 SMART Cyclin_C_2 369 492 IPR004367 -
Gabi3221g00005 502 SMART cyclin_7 373 461 IPR013763 -
Gabi3221g00005 502 SMART cyclin_7 276 360 IPR013763 -
Gabi3221g00005 502 PIRSF Cyclin_A_B_D_E 1 499 IPR046965 GO:0016538|GO:0044772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3221g00005 Gabi-Chr3221 47243 55996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3221g00005 4 502 Core Cell Cycle Gene Families AT1G44110 59.289 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3221g00005 K06627 - gmx:100789565 662.144