Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3220g00068 ATGGCATCGTACTTTCATGGTAACACTTCAGACATCCAATCCTCAGCAGAAGGGTTGCAGACACTTTACCTTATGAATCCAAACTACGTACCTTACTCTGATGCGCCGCAACAACCAACGCCCAACATGTTTCTCGTTAGTCCCAACACAACTAACAGTGCTACGACTACTCCACCCAACGCGCTCAACTTAATCAACTTCTCCCACGCGCCGCCACCTCCATCACCCAACAACCACCATCATCATTATCAACATCAACACCTAATTGGGGTCACCATTCCCGCATCAAACATCCTCGGATCCACCACCACCGACGATCCCGCTCGACAGTCCTTCCTCGGACAACATGAAATCTCCGGCTTTCATGGCTTTGCTGCCGCCGCTACCACCGCCGCCGACGCCACTGTAGCCCCTCGTGCTCACTATAACTTGTGGCGTTCCATGATTGATCAAACCGCCTCTTCTGCGGTGACAACCAGCCCATCTAGCAATTCCGGCGGCGTCGCCTCCGCCATCGCTGCCGCAGATGTGTCGCCGCGGATTGGTTTTCACAGGCCTAGTTATCAACAGGGCTTATCACTTAGCCTTTCATCGCAGCAACAAACAGCTTATAGGTCTCTCTCCGGCGATGTCGACTTTCAGGCTATATCTCCGGCGAGCCGTGGCGGCGGCGGCGGCGGCGGTGGCGATATTCACAGCTTTATTTTGGGGTCCAAGTATTTGAAAGCCTTGCAGGAGCTTCTAGATGAAGTTGTTAATGTGGGTAAGGGAATCTACAAAGGCGAATCTTTAGAGGGTGCTAAGAAAGAGAAGATGAAAGCGAATATTGAATCCAAGTCTATGATCGGTGAAGGTTCAAATGGTGGAGTAGGAGAAAACAGTGGAGGCAACAAGCAAGGAACTGAACTCACCACAGCACTGAGACAAGATCTTCAGATGAAGAAGTCCAAACTTGTCAGCATGCTCGATGAGGTTGAGCAAAGGTACCGACAATATCACCAGCAAATGCAAATTGTGATATCATCATTTGAGAAGGTAGCGGGTTTTGGGGCGGCAAAATCTTACGTAGCCCTTGCCTTAAAGACCATCTCAAAGCAATTTCGGTGTCTTAAAGATGCAATCTCTTCACAAATTAGGACAACGAGTAAGACCTTGGGCGAAGATGATTGCTTAGGAGTTAAGGTAGAAGGTTCGAGGCTCAGGTATGTTGATCACCATCTTCGACAACAACGGACACTACAACAGCTTGGAATGGTCCAGCACAATGCTTGGAGGCCCCAAAGAGGCTTACCTGAACGAGCTGTTTCCATTCTTCGTGCTTGGCTTTTTGAGCATTTCTTGCACCCCTATCCTAAGGACTCTGATAAGGTTATGCTTGCAAAACAAACTGGACTTACTCGGAGCCAGGTGTCTAATTGGTTTATAAATGCCCGAGTTCGGCTATGGAAACCAATGGTTGAAGAAATGTACTTGGAAGAAACCAAGGAGCAAGAGCAAAATAATGGCTCCCAGGATAACAAAAATAAATCAAAAGAATCAAGCAAGGAGTTATGGTCAGCAGCTAATGTTGCACAGGAATCAGGTGCAATAATGAGACCTGATCAGTTTAGTATTCTCCAATCAAAAGCAGAAAGCTTCAACAACCTAAACACTTCTCCAACTGAGATCTCAAATTCTAATTCACTTTCAACATCTCCCATTGGAGGAGGATCCCTTCAATCCCAATCTTTTTTCCATCTTGCAGGGTCTTCTGACATGCAAAGAAGTCCAAAAAAGCCAAGAAGTTCTGAAATGCAGAACTCTCCAGGTAGTATCCTTTCAGTGGACATGGAAATGAAGTCTGAGACAAATAGAGAAAGGCACAAAAAAGATGGGTACCCTTTAATGACTGGCAATGAAAACCATGTTGGTGGTTATGGTGCATTCTCCTTGGAAGAAGACATTGGAAGGTTTAATGTCACTGAGCATTTGGCTCCAAGGTTCCATGGAAATGGTGTTTCTCTCACTCTAGGACTTCCCCATAGTGAGAACCTTACTCTCTCTGGAAACCAGCATGGATTTCTCTCGCAGAATATACATTTGGGAACCAATGAAAATGAGTTTTGTGCTATCAACACTCCACCTTCTTCTCACTCAGGAACCAGTTATGAGAGTATTGATATTCAAAACAGAAAAAGGTTTTCTGCACAGTTATTGCGGGATTTCGTGGCCTAA 2214 0.4612 MASYFHGNTSDIQSSAEGLQTLYLMNPNYVPYSDAPQQPTPNMFLVSPNTTNSATTTPPNALNLINFSHAPPPPSPNNHHHHYQHQHLIGVTIPASNILGSTTTDDPARQSFLGQHEISGFHGFAAAATTAADATVAPRAHYNLWRSMIDQTASSAVTTSPSSNSGGVASAIAAADVSPRIGFHRPSYQQGLSLSLSSQQQTAYRSLSGDVDFQAISPASRGGGGGGGGDIHSFILGSKYLKALQELLDEVVNVGKGIYKGESLEGAKKEKMKANIESKSMIGEGSNGGVGENSGGNKQGTELTTALRQDLQMKKSKLVSMLDEVEQRYRQYHQQMQIVISSFEKVAGFGAAKSYVALALKTISKQFRCLKDAISSQIRTTSKTLGEDDCLGVKVEGSRLRYVDHHLRQQRTLQQLGMVQHNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEETKEQEQNNGSQDNKNKSKESSKELWSAANVAQESGAIMRPDQFSILQSKAESFNNLNTSPTEISNSNSLSTSPIGGGSLQSQSFFHLAGSSDMQRSPKKPRSSEMQNSPGSILSVDMEMKSETNRERHKKDGYPLMTGNENHVGGYGAFSLEEDIGRFNVTEHLAPRFHGNGVSLTLGLPHSENLTLSGNQHGFLSQNIHLGTNENEFCAINTPPSSHSGTSYESIDIQNRKRFSAQLLRDFVA 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3220g00068 737 MobiDBLite consensus disorder prediction 493 520 - -
Gabi3220g00068 737 Pfam Associated with HOX 235 375 IPR006563 -
Gabi3220g00068 737 MobiDBLite consensus disorder prediction 612 628 - -
Gabi3220g00068 737 Pfam Homeobox KN domain 441 480 IPR008422 GO:0003677|GO:0006355
Gabi3220g00068 737 ProSiteProfiles 'Homeobox' domain profile. 421 484 IPR001356 GO:0003677
Gabi3220g00068 737 MobiDBLite consensus disorder prediction 550 583 - -
Gabi3220g00068 737 SMART HOX_1 424 488 IPR001356 GO:0003677
Gabi3220g00068 737 FunFam BEL1-like homeodomain protein 9 427 489 - -
Gabi3220g00068 737 Gene3D - 427 507 - -
Gabi3220g00068 737 MobiDBLite consensus disorder prediction 281 300 - -
Gabi3220g00068 737 SUPERFAMILY Homeodomain-like 425 490 IPR009057 -
Gabi3220g00068 737 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 149 512 - -
Gabi3220g00068 737 MobiDBLite consensus disorder prediction 593 611 - -
Gabi3220g00068 737 SMART prehox3 229 376 IPR006563 -
Gabi3220g00068 737 MobiDBLite consensus disorder prediction 550 631 - -
Gabi3220g00068 737 CDD homeodomain 424 485 IPR001356 GO:0003677
Gabi3220g00068 737 Coils Coil 308 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3220g00068 Gabi-Chr3220 450361 455796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3220g00068 1 737 Homeobox Transcription Factor Family AT2G35940 41.677 3.34e-133 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gabi3220g00068 POX 6.9e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3220g00068 - - gmx:100786883 870.537