Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3220g00067 ATGGCATCGTACTTTCATGGTAACACTTCAGACATCCAATCCTCAGCAGAAGGGTTGCAGACACTTTACCTTATGAATCCAAACTACGTACCTTACTCTGATGCGCCGCAACAACCAACGCCCAACATGTTTCTCGTTAGTCCCAACACAACTAACAGTGCTACGACTACTCCACCCAACGCGCTCAACTTAATCAACTTCTCCCACGCGCCGCCACCTCCATCACCCAACAACCACCATCATCATTATCAACATCAACACCTAATTGGGGTCACCATTCCCGCATCAAACATCCTCGGATCCACCACCACCGACGATCCCGCTCGACAGTCCTTCCTCGGACAACATGAAATCTCCGGCTTTCATGGCTTTGCTGCCGCCGCTACCACCGCCGCCGACGCCACTGTAGCCCCTCGTGCTCACTATAACTTGTGGCGTTCCATGATTGATCAAACCGCCTCTTCTGCGGTGACAACCAGCCCATCTAGCAATTCCGGCGGCGTCGCCTCCGCCATCGCTGCCGCAGATGTGTCGCCGCGGATTGGTTTTCACAGGCCTAGTTATCAACAGGGCTTATCACTTAGCCTTTCATCGCAGCAACAAACAGCTTATAGGTCTCTCTCCGGCGATGTCGACTTTCAGGCTATATCTCCGGCGAGCCGTGGCGGCGGCGGCGGCGGCGGTGGCGATATTCACAGCTTTATTTTGGGGTCCAAGTATTTGAAAGCCTTGCAGGAGCTTCTAGATGAAGTTGTTAATGTGGGTAAGGGAATCTACAAAGGCGAATCTTTAGAGGGTGCTAAGAAAGAGAAGATGAAAGCGAATATTGAATCCAAGTCTATGATCGGTGAAGGTTCAAATGGTGGAGTAGGAGAAAACAGTGGAGGCAACAAGCAAGGAACTGAACTCACCACAGCACTGAGACAAGATCTTCAGATGAAGAAGTCCAAACTTGTCAGCATGCTCGATGAGGTTGAGCAAAGGTACCGACAATATCACCAGCAAATGCAAATTGTGATATCATCATTTGAGAAGGTAGCGGGTTTTGGGGCGGCAAAATCTTACGTAGCCCTTGCCTTAAAGACCATCTCAAAGCAATTTCGGTGTCTTAAAGATGCAATCTCTTCACAAATTAGGACAACGAGTAAGACCTTGGGCGAAGATGATTGCTTAGGAGTTAAGGTAGAAGGTTCGAGGCTCAGGTATGTTGATCACCATCTTCGACAACAACGGACACTACAACAGCTTGGAATGGTCCAGCACAATGCTTGGAGGCCCCAAAGAGGCTTACCTGAACGAGCTGTTTCCATTCTTCGTGCTTGGCTTTTTGAGCATTTCTTGCACCCCTATCCTAAGGACTCTGATAAGGTTATGCTTGCAAAACAAACTGGACTTACTCGGAGCCAGGTGTCTAATTGGTTTATAAATGCCCGAGTTCGGCTATGGAAACCAATGGTTGAAGAAATGTACTTGGAAGAAACCAAGGAGCAAGAGCAAAATAATGGCTCCCAGGATAACAAAAATAAATCAAAAGAATCAAGCAAGGAGTTATGGTCAGCAGCTAATGTTGCACAGGAATCAGGGTCTTCTGACATGCAAAGAAGTCCAAAAAAGCCAAGAAGTTCTGAAATGCAGAACTCTCCAGGTAGTATCCTTTCAGTGGACATGGAAATGAAGTCTGAGACAAATAGAGAAAGGCACAAAAAAGATGGGTACCCTTTAATGACTGGCAATGAAAACCATGTTGGTGGTTATGGTGCATTCTCCTTGGAAGAAGACATTGGAAGGTTTAATGTCACTGAGCATTTGGCTCCAAGGTTCCATGGAAATGGTGTTTCTCTCACTCTAGGACTTCCCCATAGTGAGAACCTTACTCTCTCTGGAAACCAGCATGGATTTCTCTCGCAGAATATACATTTGGGAACCAATGAAAATGAGTTTTGTGCTATCAACACTCCACCTTCTTCTCACTCAGGAACCAGTTATGAGAGTATTGATATTCAAAACAGAAAAAGGTTTTCTGCACAGTTATTGCGGGATTTCGTGGCCTAA 2052 0.4669 MASYFHGNTSDIQSSAEGLQTLYLMNPNYVPYSDAPQQPTPNMFLVSPNTTNSATTTPPNALNLINFSHAPPPPSPNNHHHHYQHQHLIGVTIPASNILGSTTTDDPARQSFLGQHEISGFHGFAAAATTAADATVAPRAHYNLWRSMIDQTASSAVTTSPSSNSGGVASAIAAADVSPRIGFHRPSYQQGLSLSLSSQQQTAYRSLSGDVDFQAISPASRGGGGGGGGDIHSFILGSKYLKALQELLDEVVNVGKGIYKGESLEGAKKEKMKANIESKSMIGEGSNGGVGENSGGNKQGTELTTALRQDLQMKKSKLVSMLDEVEQRYRQYHQQMQIVISSFEKVAGFGAAKSYVALALKTISKQFRCLKDAISSQIRTTSKTLGEDDCLGVKVEGSRLRYVDHHLRQQRTLQQLGMVQHNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEETKEQEQNNGSQDNKNKSKESSKELWSAANVAQESGSSDMQRSPKKPRSSEMQNSPGSILSVDMEMKSETNRERHKKDGYPLMTGNENHVGGYGAFSLEEDIGRFNVTEHLAPRFHGNGVSLTLGLPHSENLTLSGNQHGFLSQNIHLGTNENEFCAINTPPSSHSGTSYESIDIQNRKRFSAQLLRDFVA 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3220g00067 683 Gene3D - 427 507 - -
Gabi3220g00067 683 FunFam BEL1-like homeodomain protein 9 427 489 - -
Gabi3220g00067 683 ProSiteProfiles 'Homeobox' domain profile. 421 484 IPR001356 GO:0003677
Gabi3220g00067 683 SMART HOX_1 424 488 IPR001356 GO:0003677
Gabi3220g00067 683 MobiDBLite consensus disorder prediction 493 577 - -
Gabi3220g00067 683 SUPERFAMILY Homeodomain-like 425 490 IPR009057 -
Gabi3220g00067 683 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 97 512 - -
Gabi3220g00067 683 MobiDBLite consensus disorder prediction 281 300 - -
Gabi3220g00067 683 Pfam Homeobox KN domain 441 480 IPR008422 GO:0003677|GO:0006355
Gabi3220g00067 683 SMART prehox3 229 376 IPR006563 -
Gabi3220g00067 683 MobiDBLite consensus disorder prediction 558 574 - -
Gabi3220g00067 683 Pfam Associated with HOX 235 375 IPR006563 -
Gabi3220g00067 683 MobiDBLite consensus disorder prediction 515 557 - -
Gabi3220g00067 683 CDD homeodomain 424 485 IPR001356 GO:0003677
Gabi3220g00067 683 Coils Coil 308 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3220g00067 Gabi-Chr3220 450361 455796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3220g00067 1 683 Homeobox Transcription Factor Family AT2G35940 42.819 2.80e-135 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gabi3220g00067 POX 6.1e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3220g00067 - - gmx:100786883 814.298