Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3220g00061 ATGGGAAACACTTGTGTTGGATCGAGAAACTCAAAAGATGGACTATCTCCCTCTTTTCTTTCTAGTTCATTCTGGTGGTCAGAGTCAACGATTGAAGTGGTTTCACATAACCACGTAGAAATTTCTTGTGCACCTTCACTTGTGAGTAAAAGGCCAAATCCAAATGATCCAGAGACTGTTCATCAAAAGCCTCCTGAGGTAGTGAAATTTGACAACAAGGAGATGAAGCAGGTGCAGCAGACAACAGATAAAGAGAGTAATAAACCTTCAGAGGAACAAATAAAGCACGTGGAACAGAACACCATTGTATCAGAGCCAGTTAGGCAAAAGGAATATACTAGACCAGCAGAGCCAGCAAAACAAAAAAAGTTCCATAATGTTAAGAAGCAATCAATTGTTGGGCTTCAAGTAGATTCGGTTTTGCAGAGAAAAACGGGTTATCTTAAGGAGTACTACAATTTGGGACCAGAACTTGGGCACGGACAATATGGAACCACTTTCCTTTGTTGGGAGAAAGCTACTGGGAATAAGTATGCATGCAAGTCCATTCCTAAAGAAAAATTGGTGACAGATGATGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCACTTGGCAGGTATTCCCAATGTTGTTTCCATTAAAGGGGCTTATGAGGATGCTGTTTCGGTTCATGTTGTTATGGAATTATGTGAAGGGGGTGAGCTTTATGATAGGATTGTGGGAAAGGGATATTACACGGAAAGAAAGGCAGCTAAACTTGCAAGGACTATAGTTAGTGTTATTAAGGATTGCCACGCCCTTGGAGTAATGCATCTTGATCTTAAGCCTGAGAATTTTCTCTTCGTTAATGGCCATGAAGACTCCACCCTTAAGGCAATAGATTTTGGATTGTCTGTTTTCTTTAAACCAGGAGATGTTTTCAAGGATGTGGTTGGAAGTCCTTTTTATATAGCACCTGAAGTTCTAGGCGAGCGTTATGGCCCAGAAGCTGATATCTGGAGTGCTGGTGTGATCATATACATTCTCTTATGCGGATCACCTCCGTTTTGGGGTGGAACGGAGCAAGAAATATATTGGGATGTTTTGCATGGTGAACTTGATTTCTCTTCAGATCCTTGGCTGAATATATCTGAAAGTGCAAAAGACTTGATTAGGAAGATGCTTGTTAGAGATCCTAAACAAAGGATAACAACTGATGAAGTTCTTCGTCACCCTTGGTTTCAGGTTGATGGAGTTGCGCCTCTTGATTCTGCAGCTTTGAGTCGCCTGAAGCAGTTTCCTTTAATGAACAAGCTCAAGAAAACGGCTTTTACAGTTATTGCACAGAATCTTTCTGAAGAAGAAATTTCTGGATTGAAAGAAATGTTTAAGATGATAGATACTGACAACCGTGGTCAAATAAGTTTTGAAGAACTCAAGGTTGGACTGAAAACGTTTGGTGCTAATCTCAGGGGATCTGAAATTTTCAATCTAATGCAAGTTGCAGATGTTGATAACAGTGGCACAATAGACTATGGAGAATTCATAGCTGCAACATTGCATTTAAACAAAGTTGATATGGAAGATCATTTTGTTGACGCGTTCTCATATTTTGATAAAGACGATAGTGGCCACATCACTCAAGGTGAGCTTCAAGCTTGTGAAGAATTTGGAATGGAGGATGTCCTCTTGGAGGAAATGATTCCAGAAGCTGATCAGAATAATGGAAACATCCCAGGTAGGGTTTTTGACTCCTATGTCAAGCCTTTTGATAAGGACAACGGAAGATACACTGAGCTCTGGTCAATTTGTAGAAGGATAGAATTGGGTAAAAATTAA 1827 0.4023 MGNTCVGSRNSKDGLSPSFLSSSFWWSESTIEVVSHNHVEISCAPSLVSKRPNPNDPETVHQKPPEVVKFDNKEMKQVQQTTDKESNKPSEEQIKHVEQNTIVSEPVRQKEYTRPAEPAKQKKFHNVKKQSIVGLQVDSVLQRKTGYLKEYYNLGPELGHGQYGTTFLCWEKATGNKYACKSIPKEKLVTDDDVEDVRREIQIMHHLAGIPNVVSIKGAYEDAVSVHVVMELCEGGELYDRIVGKGYYTERKAAKLARTIVSVIKDCHALGVMHLDLKPENFLFVNGHEDSTLKAIDFGLSVFFKPGDVFKDVVGSPFYIAPEVLGERYGPEADIWSAGVIIYILLCGSPPFWGGTEQEIYWDVLHGELDFSSDPWLNISESAKDLIRKMLVRDPKQRITTDEVLRHPWFQVDGVAPLDSAALSRLKQFPLMNKLKKTAFTVIAQNLSEEEISGLKEMFKMIDTDNRGQISFEELKVGLKTFGANLRGSEIFNLMQVADVDNSGTIDYGEFIAATLHLNKVDMEDHFVDAFSYFDKDDSGHITQGELQACEEFGMEDVLLEEMIPEADQNNGNIPGRVFDSYVKPFDKDNGRYTELWSICRRIELGKN 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3220g00061 608 FunFam Calcium-dependent protein kinase 1 154 237 - -
Gabi3220g00061 608 ProSiteProfiles EF-hand calcium-binding domain profile. 522 557 IPR002048 GO:0005509
Gabi3220g00061 608 MobiDBLite consensus disorder prediction 46 65 - -
Gabi3220g00061 608 PANTHER SERINE/THREONINE-PROTEIN KINASE 137 571 - -
Gabi3220g00061 608 ProSiteProfiles EF-hand calcium-binding domain profile. 450 485 IPR002048 GO:0005509
Gabi3220g00061 608 CDD STKc_CAMK 152 409 - -
Gabi3220g00061 608 ProSiteProfiles EF-hand calcium-binding domain profile. 486 521 IPR002048 GO:0005509
Gabi3220g00061 608 CDD EFh 455 514 IPR002048 GO:0005509
Gabi3220g00061 608 Pfam EF-hand domain pair 455 515 IPR002048 GO:0005509
Gabi3220g00061 608 Gene3D Transferase(Phosphotransferase) domain 1 238 415 - -
Gabi3220g00061 608 Gene3D Phosphorylase Kinase; domain 1 155 237 - -
Gabi3220g00061 608 SUPERFAMILY Protein kinase-like (PK-like) 150 411 IPR011009 -
Gabi3220g00061 608 SMART efh_1 454 482 IPR002048 GO:0005509
Gabi3220g00061 608 SMART efh_1 490 518 IPR002048 GO:0005509
Gabi3220g00061 608 SMART efh_1 526 553 IPR002048 GO:0005509
Gabi3220g00061 608 Gene3D - 423 516 - -
Gabi3220g00061 608 MobiDBLite consensus disorder prediction 77 95 - -
Gabi3220g00061 608 FunFam Calmodulin 1 444 584 - -
Gabi3220g00061 608 Gene3D - 433 571 - -
Gabi3220g00061 608 Pfam Protein kinase domain 153 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3220g00061 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Gabi3220g00061 608 ProSitePatterns EF-hand calcium-binding domain. 499 511 IPR018247 -
Gabi3220g00061 608 ProSitePatterns Protein kinases ATP-binding region signature. 158 181 IPR017441 GO:0005524
Gabi3220g00061 608 FunFam Calcium-dependent protein kinase 5 238 418 - -
Gabi3220g00061 608 ProSiteProfiles Protein kinase domain profile. 152 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3220g00061 608 SMART serkin_6 152 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3220g00061 608 MobiDBLite consensus disorder prediction 77 96 - -
Gabi3220g00061 608 Pfam EF hand 528 549 IPR002048 GO:0005509
Gabi3220g00061 608 ProSitePatterns EF-hand calcium-binding domain. 535 547 IPR018247 -
Gabi3220g00061 608 SUPERFAMILY EF-hand 436 571 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3220g00061 Gabi-Chr3220 371883 375194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3220g00061 1 574 EF-hand Containing Proteins AT3G10660 58.632 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi3220g00061 Pkinase 3.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3220g00061 K13412 - gmx:100814475 753.821