Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3220g00056 ATGGAGGTTCAAGAGATGGAAGGCGAGAGTGAAAGTCATATGACATCAGCTGCAGCCTTTGTTGAAGGGGGGATTCAAGAATCCTGTGATGATGCTTGCAGCATATGCCTTGAGGAGTTTTGTGAAAGTGATCCTTCAACGGTCACTACTTGCAAGCACGAGTTTCACCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAACCTATAAGCTTGAAGGATCCTACCAGTCAGGAATTGTTTGAGGCAGTAGAACAGGAGAGGAAATTGAGGGTTACCCCATCAAGAAATGCTGCTATTTTTCGTCACCCTGCCCTCGGTGATTTTGAATTGCAGCACTTACGCATGGGTGTAAATGATGCTGATTTTGAAGAGAGAATAATTCAACATTTAGCTGCTGCTGCTGCAATGGGGAGAACACACCACCTTGGTCGGAGGGAAGGGCATCGAACTCGGTCATCTGGTCATGGCCATCCACACTTCTTAGTATTCTCAACTCAGCCTATTGCACCTTCATCAGGTCCTGATTCAGCTGCTGGACGGGGAAATGAACCAGCTGCAATTCCTACGGGAAGTCCATCTACCCCAATAACATCTGATGGAGATGAACCATCACAGCAGATCCCTCATCTTCAGCCTCTAAGTTCTTCTTCATCTTCTGGATCTACTTTCATGGCAACAAATCACCTAGGAATCAACTCTAAGGATAGAGGCTCTATTGCTCATTCTTCATCAGCAAACCAAGATAGAGCAGGGCCATCAGAATTACAGTCATTTTCTGATTCTCTGCGGTCAAGACTTAATGCAATGTCCATGAGATACAAAGAGTCAATTTCAAAGGGCGCAAGGGGATGGAAGGAGAGGCTGTTCTCTCGTAGTTCTTCCATGTCAGAACTTGCCCCGGAAGCTAGGGGAGAGGTGAATGCTGGAATTACTAGTGTATCCCGATTGATGGAATCCCTTGAAATTAGAGAAAATAATAGAGCTGTGGATACTTCTTTGTCAAATCATTTGGAGGATTGTAACAATGCAGAGGCGAGCAACCAGAACAATGTTGAAGCTAGTGGAGAAAACTCTTCACGTAATGATAATACTCGAGCTGCTTGTTCTGCTGGCTCACATTCAAATTGA 1152 0.4523 MEVQEMEGESESHMTSAAAFVEGGIQESCDDACSICLEEFCESDPSTVTTCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELFEAVEQERKLRVTPSRNAAIFRHPALGDFELQHLRMGVNDADFEERIIQHLAAAAAMGRTHHLGRREGHRTRSSGHGHPHFLVFSTQPIAPSSGPDSAAGRGNEPAAIPTGSPSTPITSDGDEPSQQIPHLQPLSSSSSSGSTFMATNHLGINSKDRGSIAHSSSANQDRAGPSELQSFSDSLRSRLNAMSMRYKESISKGARGWKERLFSRSSSMSELAPEARGEVNAGITSVSRLMESLEIRENNRAVDTSLSNHLEDCNNAEASNQNNVEASGENSSRNDNTRAACSAGSHSN 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3220g00056 383 SMART ring_2 33 73 IPR001841 -
Gabi3220g00056 383 MobiDBLite consensus disorder prediction 146 267 - -
Gabi3220g00056 383 FunFam E3 ubiquitin-protein ligase RHF2A 4 107 - -
Gabi3220g00056 383 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Gabi3220g00056 383 MobiDBLite consensus disorder prediction 195 267 - -
Gabi3220g00056 383 MobiDBLite consensus disorder prediction 351 383 - -
Gabi3220g00056 383 Pfam Ring finger domain 32 73 IPR001841 -
Gabi3220g00056 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 82 IPR013083 -
Gabi3220g00056 383 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 10 82 - -
Gabi3220g00056 383 SUPERFAMILY RING/U-box 25 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3220g00056 Gabi-Chr3220 341811 347345 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3220g00056 30 73 C3H Transcription Factor Family AT5G15790 52.273 1.46e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3220g00056 K19043 - gmx:100800419 560.066