Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3220g00045 ATGTTCAAGGATCTGACCTACAAGGTAGTGATTAGAGGCATGACAACAACTGAGGAGAAGGAGATTTTGAAGGGGATCACTGGTTCTGTAAATCCAGGGGAAGTTTTGGCAATGATGGGTCCCTCAGGAAGTGGAAAGACATCTTTGTTAAATCTGCTTGGAGGCAGACTTAGTCAGCCCTCAATGGGTGGCTCTGTCACTTACAATGACCTACCATATTCCAAGTTCCTAAAGAGCAGGATTGGATTCGTGACACAAGATGATGTTCTGTTTCCACACCTAACCGTGAAAGAAACATTGACATATGCAGCCCTCCTAAAGTTGCCAAATACATTAACGAAAGATCAAAAGGAAAAACGAGCTTTAGATGTCATCAATGAGCTGGGCTTGGAGAGGTGCCAAGACACTATGATAGGAGGTTCCTTTGTTCGAGGAGTGTCTGGTGGAGAGAGGAAGAGAGTTTGTATTGGCAATGAGATCATAATCAATCCTTCTCTTCTGTTTCTTGATGAACCAACTTCTGGTTTGGATTCTACAACAGCCTTGAGGATAGTTCAGATGCTACATGATATAGCAGAGGCTGGTAAAACCATAGTGACAACAATCCATCAGCCATCAAGCAGACTCTTCCATAAATTTGATAAGTTGATCCTTCTAGGAAAAGGGAGCTTGCTTTACTTTGGAAAAGCATCTGAAGCAATGGACTATTTCCAATTTATAGGGTGCACACCTCTTATTGCCATGAATCCAGCAGAGTTTTTATTAGACCTTGCAAATGGAAACGTAAATGATATTTCTGTACCATCAGAGTTAGAGGATAAAGTGCAGGTGGGAAATGCCGAAGCTGAAACACAAAATGGGAAACCATCAGCTGCAGTTGTACAAGAGTATCTGGTGGAGGCATATGAGACTAGAGTTGCAGAAATAGAGAAGAAAAAGCTAATGGTTCCTATTCCCCTTGATGAAGAACTGAAATCTAAGGTTCATTCTCTTAAAAGACAGTGGGGAGCAAGTTGGTGTGAACAATATTCCATATTATTTAGGAGAGGATTCAAAGAACGGAGGCATGACTATTTTAGCTGGTTGAGAATCACCCAAGTTCTAGCCACAGCAATCATCTTAGGACTACTCTGGTGGCAATCAGATGCTAACGACCCAAACGGTCAGCAAGACCAGGCAGGACTGCTTTTCTTTATTGCTGTCTTTTGGGGATTCTTTCCTGTGTTCACTGCAATATTCACATTTCCTCAAGAGAGAGCCATGCTGACTAAGGAACGAGCAACGGATATGTACAGGCTAAGTGCATACTTCGTGGCTAGAACTACAAGTGACCTTCCACTAGACCTGGTTTTACCAGTGCTTTTTCTCCTCGTTGTTTATTTCATGGCCGGTTTGAGACTCAGTGCAGGACCTTTTTTCCTTAGTATTCTTACAGTTTTTCTCTGCATTGTGGCAGCTCAGGGACTTGGACTTGCTATTGGGGCTACACTAATGGACTTGAAAAGGGCAACAACTTTGGCTTCAGTAACTGTGATGACTTTCATGCTGGCTGGAGGTTTTTTTGTCAAGAAAGTCCCCATATTTATATCTTGGATTCGCTACATATCTTTCAACTACCACACGTACAAACTTTTGCTCAAGGTGCAATATGAGCACATTACACCTAGCATAAATGGGATCAAAATTGATAGTTGTTTCACAGAGGTTGCTGCTCTAATAACCATGGTTTTTGGTTACCGTTTATTGGCATATCTTTCTTTGCGGTGGATGAAACTTCAAGCTGGAGCTTAA 1791 0.4199 MFKDLTYKVVIRGMTTTEEKEILKGITGSVNPGEVLAMMGPSGSGKTSLLNLLGGRLSQPSMGGSVTYNDLPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAALLKLPNTLTKDQKEKRALDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLHDIAEAGKTIVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMDYFQFIGCTPLIAMNPAEFLLDLANGNVNDISVPSELEDKVQVGNAEAETQNGKPSAAVVQEYLVEAYETRVAEIEKKKLMVPIPLDEELKSKVHSLKRQWGASWCEQYSILFRRGFKERRHDYFSWLRITQVLATAIILGLLWWQSDANDPNGQQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERATDMYRLSAYFVARTTSDLPLDLVLPVLFLLVVYFMAGLRLSAGPFFLSILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVKKVPIFISWIRYISFNYHTYKLLLKVQYEHITPSINGIKIDSCFTEVAALITMVFGYRLLAYLSLRWMKLQAGA 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3220g00045 596 CDD ABCG_EPDR 2 228 - -
Gabi3220g00045 596 SMART AAA_5 32 223 IPR003593 GO:0016887
Gabi3220g00045 596 Pfam ABC transporter 23 174 IPR003439 GO:0005524
Gabi3220g00045 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 240 IPR027417 -
Gabi3220g00045 596 Gene3D - 2 240 IPR027417 -
Gabi3220g00045 596 ProSitePatterns ABC transporters family signature. 146 160 IPR017871 GO:0005524|GO:0016887
Gabi3220g00045 596 FunFam ABC transporter G family member 22 10 240 - -
Gabi3220g00045 596 Pfam ABC-2 type transporter 341 550 IPR013525 GO:0016020|GO:0140359
Gabi3220g00045 596 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 5 246 IPR003439 GO:0005524
Gabi3220g00045 596 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 2 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3220g00045 Gabi-Chr3220 282285 288763 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3220g00045 21 275 Calmodulin-binding Proteins AT2G36910 30.038 2.36e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3220g00045 K05681 - gmx:100802030 1043.11