Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3220g00044 ATGACAACAACTGAGGAGAAGGAGATTTTGAAGGGGATCACTGGTTCTGTAAATCCAGGGGAAGTTTTGGCAATGATGGGTCCCTCAGGAAGTGGAAAGACATCTTTGTTAAATCTGCTTGGAGGCAGACTTAGTCAGCCCTCAATGGGTGGCTCTGTCACTTACAATGACCTACCATATTCCAAGTTCCTAAAGAGCAGGATTGGATTCGTGACACAAGATGATGTTCTGTTTCCACACCTAACCGTGAAAGAAACATTGACATATGCAGCCCTCCTAAAGTTGCCAAATACATTAACGAAAGATCAAAAGGAAAAACGAGCTTTAGATGTCATCAATGAGCTGGGCTTGGAGAGGTGCCAAGACACTATGATAGGAGGTTCCTTTGTTCGAGGAGTGTCTGGTGGAGAGAGGAAGAGAGTTTGTATTGGCAATGAGATCATAATCAATCCTTCTCTTCTGTTTCTTGATGAACCAACTTCTGGTTTGGATTCTACAACAGCCTTGAGGATAGTTCAGATGCTACATGATATAGCAGAGGCTGGTAAAACCATAGTGACAACAATCCATCAGCCATCAAGCAGACTCTTCCATAAATTTGATAAGTTGATCCTTCTAGGAAAAGGGAGCTTGCTTTACTTTGGAAAAGCATCTGAAGCAATGGACTATTTCCAATTTATAGGGTGCACACCTCTTATTGCCATGAATCCAGCAGAGTTTTTATTAGACCTTGCAAATGGAAACGTAAATGATATTTCTGTACCATCAGAGTTAGAGGATAAAGTGCAGGTGGGAAATGCCGAAGCTGAAACACAAAATGGGAAACCATCAGCTGCAGTTGTACAAGAGTATCTGGTGGAGGCATATGAGACTAGAGTTGCAGAAATAGAGAAGAAAAAGCTAATGGTTCCTATTCCCCTTGATGAAGAACTGAAATCTAAGGTTCATTCTCTTAAAAGACAGTGGGGAGCAAGTTGGTGTGAACAATATTCCATATTATTTAGGAGAGGATTCAAAGAACGGAGGCATGACTATTTTAGCTGGTTGAGAATCACCCAAGTTCTAGCCACAGCAATCATCTTAGGACTACTCTGGTGGCAATCAGATGCTAACGACCCAAACGGTCAGCAAGACCAGGCAGGACTGCTTTTCTTTATTGCTGTCTTTTGGGGATTCTTTCCTGTGTTCACTGCAATATTCACATTTCCTCAAGAGAGAGCCATGCTGACTAAGGAACGAGCAACGGATATGTACAGGCTAAGTGCATACTTCGTGGCTAGAACTACAAGTGACCTTCCACTAGACCTGGTTTTACCAGTGCTTTTTCTCCTCGTTGTTTATTTCATGGCCGGTTTGAGACTCAGTGCAGGACCTTTTTTCCTTAGTATTCTTACAGTTTTTCTCTGCATTGTGGCAGCTCAGGGACTTGGACTTGCTATTGGGGCTACACTAATGGACTTGAAAAGGGCAACAACTTTGGCTTCAGTAACTGTGATGACTTTCATGCTGGCTGGAGGTTTTTTTGTCAAGAAAGTCCCCATATTTATATCTTGGATTCGCTACATATCTTTCAACTACCACACGTACAAACTTTTGCTCAAGGTGCAATATGAGCACATTACACCTAGCATAAATGGGATCAAAATTGATAGTTGTTTCACAGAGGTTGCTGCTCTAATAACCATGGTTTTTGGTTACCGTTTATTGGCATATCTTTCTTTGCGGTGGATGAAACTTCAAGCTGGAGCTTAA 1752 0.4195 MTTTEEKEILKGITGSVNPGEVLAMMGPSGSGKTSLLNLLGGRLSQPSMGGSVTYNDLPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAALLKLPNTLTKDQKEKRALDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLHDIAEAGKTIVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMDYFQFIGCTPLIAMNPAEFLLDLANGNVNDISVPSELEDKVQVGNAEAETQNGKPSAAVVQEYLVEAYETRVAEIEKKKLMVPIPLDEELKSKVHSLKRQWGASWCEQYSILFRRGFKERRHDYFSWLRITQVLATAIILGLLWWQSDANDPNGQQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERATDMYRLSAYFVARTTSDLPLDLVLPVLFLLVVYFMAGLRLSAGPFFLSILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVKKVPIFISWIRYISFNYHTYKLLLKVQYEHITPSINGIKIDSCFTEVAALITMVFGYRLLAYLSLRWMKLQAGA 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3220g00044 583 SMART AAA_5 19 210 IPR003593 GO:0016887
Gabi3220g00044 583 Pfam ABC-2 type transporter 328 537 IPR013525 GO:0016020|GO:0140359
Gabi3220g00044 583 Gene3D - 2 227 IPR027417 -
Gabi3220g00044 583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 227 IPR027417 -
Gabi3220g00044 583 CDD ABCG_EPDR 2 215 - -
Gabi3220g00044 583 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 233 IPR003439 GO:0005524
Gabi3220g00044 583 FunFam ABC transporter G family member 22 1 227 - -
Gabi3220g00044 583 Pfam ABC transporter 10 161 IPR003439 GO:0005524
Gabi3220g00044 583 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 5 571 - -
Gabi3220g00044 583 ProSitePatterns ABC transporters family signature. 133 147 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3220g00044 Gabi-Chr3220 282285 288763 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3220g00044 8 262 Calmodulin-binding Proteins AT2G36910 30.038 2.81e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3220g00044 K05681 - gmx:100802030 1026.54