Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3220g00043 ATGAGGTTAGCAGCGGTGTGGCACTTAGCCGAGCTTCAAGTGCAAGCTTGGGCCTCTCATTCTCCTTCACTGGCTTCACTCTGCCTCCTGATGAAATCTCTGACTTCAAACCCTTCAGCGACGATGATATCCTTCAAGGATCTGACCTACAAGGTAGTGATTAGAGGCATGACAACAACTGAGGAGAAGGAGATTTTGAAGGGGATCACTGGTTCTGTAAATCCAGGGGAAGTTTTGGCAATGATGGGTCCCTCAGGAAGTGGAAAGACATCTTTGTTAAATCTGCTTGGAGGCAGACTTAGTCAGCCCTCAATGGGTGGCTCTGTCACTTACAATGACCTACCATATTCCAAGTTCCTAAAGAGCAGGATTGGATTCGTGACACAAGATGATGTTCTGTTTCCACACCTAACCGTGAAAGAAACATTGACATATGCAGCCCTCCTAAAGTTGCCAAATACATTAACGAAAGATCAAAAGGAAAAACGAGCTTTAGATGTCATCAATGAGCTGGGCTTGGAGAGGTGCCAAGACACTATGATAGGAGGTTCCTTTGTTCGAGGAGTGTCTGGTGGAGAGAGGAAGAGAGTTTGTATTGGCAATGAGATCATAATCAATCCTTCTCTTCTGTTTCTTGATGAACCAACTTCTGGTTTGGATTCTACAACAGCCTTGAGGATAGTTCAGATGCTACATGATATAGCAGAGGCTGGTAAAACCATAGTGACAACAATCCATCAGCCATCAAGCAGACTCTTCCATAAATTTGATAAGTTGATCCTTCTAGGAAAAGGGAGCTTGCTTTACTTTGGAAAAGCATCTGAAGCAATGGACTATTTCCAATTTATAGGGTGCACACCTCTTATTGCCATGAATCCAGCAGAGTTTTTATTAGACCTTGCAAATGGAAACGTAAATGATATTTCTGTACCATCAGAGTTAGAGGATAAAGTGCAGGTGGGAAATGCCGAAGCTGAAACACAAAATGGGAAACCATCAGCTGCAGTTGTACAAGAGTATCTGGTGGAGGCATATGAGACTAGAGTTGCAGAAATAGAGAAGAAAAAGCTAATGGTTCCTATTCCCCTTGATGAAGAACTGAAATCTAAGGTTCATTCTCTTAAAAGACAGTGGGGAGCAAGTTGGTGTGAACAATATTCCATATTATTTAGGAGAGGATTCAAAGAACGGAGGCATGACTATTTTAGCTGGTTGAGAATCACCCAAGTTCTAGCCACAGCAATCATCTTAGGACTACTCTGGTGGCAATCAGATGCTAACGACCCAAACGGTCAGCAAGACCAGGCAGGACTGCTTTTCTTTATTGCTGTCTTTTGGGGATTCTTTCCTGTGTTCACTGCAATATTCACATTTCCTCAAGAGAGAGCCATGCTGACTAAGGAACGAGCAACGGATATGTACAGGCTAAGTGCATACTTCGTGGCTAGAACTACAAGTGACCTTCCACTAGACCTGGTTTTACCAGTGCTTTTTCTCCTCGTTGTTTATTTCATGGCCGGTTTGAGACTCAGTGCAGGACCTTTTTTCCTTAGTATTCTTACAGTTTTTCTCTGCATTGTGGCAGCTCAGGGACTTGGACTTGCTATTGGGGCTACACTAATGGACTTGAAAAGGGCAACAACTTTGGCTTCAGTAACTGTGATGACTTTCATGCTGGCTGGAGGTTTTTTTGTCAAGAAAGTCCCCATATTTATATCTTGGATTCGCTACATATCTTTCAACTACCACACGTACAAACTTTTGCTCAAGGTGCAATATGAGCACATTACACCTAGCATAAATGGGATCAAAATTGATAGTTGTTTCACAGAGGTTGCTGCTCTAATAACCATGGTTTTTGGTTACCGTTTATTGGCATATCTTTCTTTGCGGTGGATGAAACTTCAAGCTGGAGCTTAA 1920 0.4266 MRLAAVWHLAELQVQAWASHSPSLASLCLLMKSLTSNPSATMISFKDLTYKVVIRGMTTTEEKEILKGITGSVNPGEVLAMMGPSGSGKTSLLNLLGGRLSQPSMGGSVTYNDLPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAALLKLPNTLTKDQKEKRALDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLHDIAEAGKTIVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMDYFQFIGCTPLIAMNPAEFLLDLANGNVNDISVPSELEDKVQVGNAEAETQNGKPSAAVVQEYLVEAYETRVAEIEKKKLMVPIPLDEELKSKVHSLKRQWGASWCEQYSILFRRGFKERRHDYFSWLRITQVLATAIILGLLWWQSDANDPNGQQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERATDMYRLSAYFVARTTSDLPLDLVLPVLFLLVVYFMAGLRLSAGPFFLSILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVKKVPIFISWIRYISFNYHTYKLLLKVQYEHITPSINGIKIDSCFTEVAALITMVFGYRLLAYLSLRWMKLQAGA 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3220g00043 639 SMART AAA_5 75 266 IPR003593 GO:0016887
Gabi3220g00043 639 CDD ABCG_EPDR 43 271 - -
Gabi3220g00043 639 Pfam ABC transporter 66 217 IPR003439 GO:0005524
Gabi3220g00043 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 283 IPR027417 -
Gabi3220g00043 639 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 289 IPR003439 GO:0005524
Gabi3220g00043 639 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 40 627 - -
Gabi3220g00043 639 Pfam ABC-2 type transporter 384 593 IPR013525 GO:0016020|GO:0140359
Gabi3220g00043 639 FunFam ABC transporter G family member 22 53 283 - -
Gabi3220g00043 639 ProSitePatterns ABC transporters family signature. 189 203 IPR017871 GO:0005524|GO:0016887
Gabi3220g00043 639 Gene3D - 41 283 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3220g00043 Gabi-Chr3220 282112 288763 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3220g00043 64 318 Calmodulin-binding Proteins AT2G36910 30.038 3.42e-15 77.8