Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3220g00039 ATGCTGAGCTTCAGGGTGAGGAACTTGTTGTCCCGTGTCAGAAGAAGGACAAAGAAAAACATCAGAAACAGAAACACGCGCAAGCTCAGAAACCAAAACTGCATTTCCATTGCAAAAGAGTTACCATGTCTTGTAGAAGAAGAAGAAGATACTGAGGAAGGTTTCAGAATCAAAAGCTCTGCACCATCACACAATCATGGAGTTCAGCCCTTGGGTAATCTTTATCTCAACCCAGGTTCCATCAACTCCAGAGACACGGGTTTAGGTAATCTTCATATACTTACGGATGAGCTTGTTCTTGAGATTCTAGGGTTTTTGGATGGTACCAGTTTGGGGGTTTTGGCCACTGCAAGCAAGTCTTTTTATGTTTTTACCAACCATGAACCCCTTTGGAAGAATCTTGTATTGGATAATCTTCTTGGTGGGTTTCGGTACAATGGGTCTTGGAAATCTACTTATGTTGCTTCTTGTTACCCTTCATTTCATATCTCGAGTAGTGCTCTTCAGAGTTTCAAAGTTAGAGACTTTTATTCTGATTATCTCTTTCAGAGTTGGCTCTGTGCTAATCTTGAAATGAAGCCCGAATGGCTGGAGAGGGATAATATAGTTCGAAAGAAAGGTATTTCAGTTGAAGAGTTTGTGTTGAATTTTGAGGAGCCTAATAAGCCGGTGTTGTTGGAAGGGTGTCTTGATAATTGGGATGCGTTGAGAAATTGGGATAGGGATTATTTGTTGCAGTTGTGTGGTGATGTTAAGTTTTCAGTTGGGCCAGTGGAGATGAAGCTTGGAGACTATTTTGGGTACTCGGATCAAGTTAGAGAAGAAAGACCATTGTATTTGTTTGATCCAAAATTTGTTGAAAAAGTTCCAAAATTGGGTTCTGAATATGAAGTTCCAGTATACTTTCAGGAGGACTTGTTTGTTGTTTTGGGCAATGAGAGACCTGATTACAGATGGATTATTATTGGACCAGCTGGGTCTGGATCATCATTCCATGTTGATCCAAATTCTACTTCTGCTTGGAATGCAGTGATCAAGGGGTCCAAGAAATGGGTATTATTTCCTCCTGATGTAATTCCACCTGGGGTTCATCCTAGTCCTGATGGTGCAGAGGTGGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTTTATGGTGCAACGAAAATTTGGAAAAAGAAACCAATTGAGTGCATATGTAAAGCTGGGGAGGTTATATTTGTGCCTAATGGATGGTGGCATTTGGTGATCAACCTGGAGGAATCTATAGCCATAACCCAAAACTATGTTAGTAGGAGAAATTTGTTAGATGTCTTAAATTTTCTTCAAAGGCCAAATGCTAGCACACTGGTATCAGGAACAAGGGATCGAGTGAATCTGTATGATAAGTTTAAGAATGCTATTGAGGCTTCTTTTCCAGGAACAATTGATGAACTGACCCAAAAAGAAGAAGAGAAAAAGATCCAGCAAAGGAAACTTTCCTTCTGGGATTCTGCCACAGATGCCAAGGTGGGAGCTTTCAAGTTCTCTTTCTAG 1539 0.4042 MLSFRVRNLLSRVRRRTKKNIRNRNTRKLRNQNCISIAKELPCLVEEEEDTEEGFRIKSSAPSHNHGVQPLGNLYLNPGSINSRDTGLGNLHILTDELVLEILGFLDGTSLGVLATASKSFYVFTNHEPLWKNLVLDNLLGGFRYNGSWKSTYVASCYPSFHISSSALQSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIVRKKGISVEEFVLNFEEPNKPVLLEGCLDNWDALRNWDRDYLLQLCGDVKFSVGPVEMKLGDYFGYSDQVREERPLYLFDPKFVEKVPKLGSEYEVPVYFQEDLFVVLGNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWVLFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKIWKKKPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLDVLNFLQRPNASTLVSGTRDRVNLYDKFKNAIEASFPGTIDELTQKEEEKKIQQRKLSFWDSATDAKVGAFKFSF 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3220g00039 512 Gene3D - 84 160 - -
Gabi3220g00039 512 Gene3D Cupin 169 432 - -
Gabi3220g00039 512 SMART cupin_9 278 447 IPR003347 -
Gabi3220g00039 512 FunFam F-box protein At1g78280 182 432 - -
Gabi3220g00039 512 ProSiteProfiles JmjC domain profile. 287 447 IPR003347 -
Gabi3220g00039 512 Pfam Cupin-like domain 212 430 IPR041667 -
Gabi3220g00039 512 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 88 510 - -
Gabi3220g00039 512 SUPERFAMILY Clavaminate synthase-like 204 445 - -
Gabi3220g00039 512 SUPERFAMILY F-box domain 86 156 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3220g00039 Gabi-Chr3220 253654 256428 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3220g00039 79 436 Glycosyltransferase AT1G78280 37.802 1.01e-75 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi3220g00039 Cupin_8 6.6e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3220g00039 - - lja:Lj1g3v4753250.1 894.419