Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3220g00016 ATGGCTTCGAGATTCTGGACTCAGGGTGGTAGTGATTCCGAGGAGGAGGAGAGTGATTATGATGAGGAGATTGAGACTGCAGCCGGTGAATCTGCTAATCAAGCTGTTACAAGCAGATACTTGCAGGACAATGCAAGTGACAGTGATGACTCTGATGGCCAAAAGCGCGTTGTCAGGTCAGCAAAAGATAAGCGTTTTGAGGAGATGGCTTCTACTGTTGATCAGATGAAGAATGCCATGAAGATTAATGACTGGGTGAGCTTGCAAGAGAGCTTTGACAAGATTAACAAACAGCTTGAGAAAGTTATGCGTGTTACTGAGTCCGAGAAGGTGCCCAATCTTTATATTAAGGCACTTGTGATGCTAGAAGATTTCTTGACTCAGGCTTTGGCAAATAAGGATGCAAAAAAGAAGATGAGTAGTAGCAATGCTAAAGCCTTGAACTCAATGAAGCAGAAGTTGAAGAAGAACAATAAGCAATATGAGGACATGATTAACAAATGCAGGGAGAATCCGGAGAGTGAGGAGGAAAAAGATGAAGAGGAGACGGAGGAAGAATATGAAAGTGAGGATGAGATTATTGACCCTGAGCAGCTTAGAAAAGATGGACCCAAGTCAGATTCAGAAGCTTCTCAATATGAAGATGACAAGACTGGTGCAAATGAAGCACCTTGGGACCAAAAGTTTATGAAAAAAGACAGAATTTTGGGAACACAGTTTTTGAAAGACCCCAGCGAGATCACATGGGACAAAGTAAATCAAAAGTTCAAAGAGGTTGTGGCAGCTAGGGGCAGGAAGGGAACTGGAAGGTTTGAACAGGTTGAGCAACTCACCTTCTTGACAAAAGTTGCTAAAACACCTGCACAGAAGCTGGAAATTCTGTTTAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGCCTCAGTGGGCATATGCCCATTAATGTATGGAAAAAATGTGTGCAAAACATGCTGATAATTCTGGATATTCTAGTGCAGTACCCAAACATAGTGGTTGATGATTCGGTGGAGCCAGATGAGAATGAAACTCAGAAAGGGCCTGACTATGATGGATCAATTCGGGTTTGGGGTAATTTAGTTGCATTCTTAGAAAGAATAGATGCTGAGTTTTTCAAGAGCCTGCAGTGCATAGATCCTCATACCCGTGAGTATGTGGAGAGACTACGGGATGAGCCCATGTTTTTGGTTCTTGCTCAGAATGTCCAAGAATATCTTGAAAGGATTGGAGATTTCAGAGCTTCTTCTAAGGTAGCCTTGAGGAGGGTTGAACTCATTTACTACAAACCTCAAGAGGTTTATGATGCCATGAGAAAATTGGCTGAACTGACGGAAGATATAGATAATGGAGGGGAGGCAAGTGAAGAGTCAAAAGGATTTGAGGAAACACGAATTCCTACTGCTTTTGTTGTTACTCCGGAGCTTGTGGCCCGAAAATCCTCCTTCCCTGGGAATAGCAGGAACTTAATGGATGAATTGGTATCACTAATCTACAAATATGGTGACGAGCGTACTAAAGCACGCGCAATGCTTTGTGATATATACCACCATGCTCTTCGCGATGAGTTCTCAATAGCTCGTGATCTACTGCTTATGAGTCACTTGCAAGACAATGTTCAGCATATGGACATTTCTACACAGATACTTTTTAACAGGGCTATGGCGCAGCTAGGTCTATGTGCTTTTCGGGTCGGACTGATTTCCGAAGCTCATGGATGTCTTTCTGAACTTTACTCTGGTGGAAGGGTGAAGGAGTTGCTTGCACAAGGTGTGTCTCAAAGTCGTTACCATGAGAAGACTCCAGAACAGGAAAGATTGGAAAGAAGACGTCAGATGCCATATCATATGCACATAAATCTTGAGCTCTTGGAGGCTGTTCATCTTATATCTGCTATGCTGCTGGAAGTTCCTAATATGGCAGCCAATATTCATGATGCAAAGCGCAAGGTCATCAGTAAGAATTTCCGTCGCCTGCTGGAGGTCAGCGATAAACAAACATTCACCGGTCCACCTGAAAATGTCAGAGATCATGTTATGGCTGCCACAAGGGTTCTTAGCAAGGGAGACTTCCACAAGGCTTTTGACATTATTGTCTCTCTTGATGTATGGAAATTTGTGAGAAATCGGGACAGTGTGCTTGAAATGTTGAAGGACAAAATTAAGGAGGAGGCCTTGAGGACATACCTCTTTACCTTCTCTTCATCTTATGATTCTTTGAGCCTGGATCAGCTTACAAAAATTTTTGACCTCTCTGTGCCTCGCACTCATAGCATTGTTAGTAGGATGATGATCAATGAGGAGCTTCATGCTAGCTGGGACCAGCCAACTGGGTGCATTGTTTTCCAAGATGTTGAACACTCAAGACAGCAGGCTTTGGCATTCCAGTTGACAGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCAACAGAGGCAAGAATAGGTGGTGGTGGAATGGATCTGCCTCTGAGGCGGAGAGATAACCAGGACTATGCTGCTGCCGCTGCTGGGGGTGGAACTGGGTCTTTAGGTGGTAGGTGGCAAGACATGTCCCTTTCTCAGCCAAGGCAAGGCAGTGGACGTGCAGGATATGGTAGTGGTGGCGGAAGGCCATTCGCATTAGGCCAAGCAACTGGGAGTGGCTATTCAAGGGATCGAATGGGAAGAGGAACAGGTACTGGCTATCAGAGTGCACGGTATCAAGGAGGTTCATCGTTGAGGGGATCCCAGGGCGATGTATCTACCCGTATGGTTAGCCTCAAGGGAGTTCGTGCTTAA 2799 0.4444 MASRFWTQGGSDSEEEESDYDEEIETAAGESANQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLEDFLTQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDMINKCRENPESEEEKDEEETEEEYESEDEIIDPEQLRKDGPKSDSEASQYEDDKTGANEAPWDQKFMKKDRILGTQFLKDPSEITWDKVNQKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPINVWKKCVQNMLIILDILVQYPNIVVDDSVEPDENETQKGPDYDGSIRVWGNLVAFLERIDAEFFKSLQCIDPHTREYVERLRDEPMFLVLAQNVQEYLERIGDFRASSKVALRRVELIYYKPQEVYDAMRKLAELTEDIDNGGEASEESKGFEETRIPTAFVVTPELVARKSSFPGNSRNLMDELVSLIYKYGDERTKARAMLCDIYHHALRDEFSIARDLLLMSHLQDNVQHMDISTQILFNRAMAQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNMAANIHDAKRKVISKNFRRLLEVSDKQTFTGPPENVRDHVMAATRVLSKGDFHKAFDIIVSLDVWKFVRNRDSVLEMLKDKIKEEALRTYLFTFSSSYDSLSLDQLTKIFDLSVPRTHSIVSRMMINEELHASWDQPTGCIVFQDVEHSRQQALAFQLTEKLSILAESNERATEARIGGGGMDLPLRRRDNQDYAAAAAGGGTGSLGGRWQDMSLSQPRQGSGRAGYGSGGGRPFALGQATGSGYSRDRMGRGTGTGYQSARYQGGSSLRGSQGDVSTRMVSLKGVRA 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3220g00016 932 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 721 809 IPR000717 -
Gabi3220g00016 932 Coils Coil 144 171 - -
Gabi3220g00016 932 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 870 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gabi3220g00016 932 MobiDBLite consensus disorder prediction 45 63 - -
Gabi3220g00016 932 MobiDBLite consensus disorder prediction 853 867 - -
Gabi3220g00016 932 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 652 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gabi3220g00016 932 MobiDBLite consensus disorder prediction 30 44 - -
Gabi3220g00016 932 MobiDBLite consensus disorder prediction 133 224 - -
Gabi3220g00016 932 ProSiteProfiles PCI domain profile. 620 792 IPR000717 -
Gabi3220g00016 932 MobiDBLite consensus disorder prediction 194 224 - -
Gabi3220g00016 932 MobiDBLite consensus disorder prediction 1 63 - -
Gabi3220g00016 932 Gene3D - 727 797 IPR036388 -
Gabi3220g00016 932 MobiDBLite consensus disorder prediction 134 154 - -
Gabi3220g00016 932 MobiDBLite consensus disorder prediction 901 923 - -
Gabi3220g00016 932 Pfam PCI domain 660 788 IPR000717 -
Gabi3220g00016 932 MobiDBLite consensus disorder prediction 175 193 - -
Gabi3220g00016 932 MobiDBLite consensus disorder prediction 155 174 - -
Gabi3220g00016 932 MobiDBLite consensus disorder prediction 12 26 - -
Gabi3220g00016 932 SUPERFAMILY "Winged helix" DNA-binding domain 716 793 IPR036390 -
Gabi3220g00016 932 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 927 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gabi3220g00016 932 MobiDBLite consensus disorder prediction 841 932 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3220g00016 Gabi-Chr3220 115528 120131 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3220g00016 1 932 Eukaryotic Initiation Factors Gene Family AT3G56150 69.904 0.0 1207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3220g00016 K03252 - gmx:100779751 1521.91