Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3217g00043 ATGCAATTGTCTCGTGACGTTAGGCTCAACAGTAATAGCGGGTTCCGTAGTTTCCGTCATAATCCTATGGGGGTTGGTCGATTACATTTGGTCACCATAAATCTTTCAACATGTAGATTGAAGCAAGATTCTTCAGCACTCCATCTTTTTAGAGTACATGCCCCAATACGGCATGTGCCTTCCAGATGTAATGTTTTCGTATGCCGGTCTGTCCTAACACCAGGTGGAGGGAATGTGAATCTGCTCATGAAATCTGCTACTGTTTTTTTAACAAGGTCATATGATGCTTTATGTGGAAGCCCTATTTGGCTTCGATTGATCCCAGCCCTTGGTATCATTGCCTTTGCTGTTTATGGTCTTGAGCCGCTCATTCGTCTCAGCAGGACCCTATTTCTTCAAAGGAATGACAGTAGTTGGAAGAAAAGTAGTTCGCGATATATGATGACATCTTATTTTCAGCCATTGCTGTTATGGACTGGGGCAATGCTCATATGCAGGGCATTAGATCCACTAGTCCTACCATCTGAGACCAGCCAGGTTGTGAAGCAAAGGCTGCTTAATTTTGTGAGATCTTTGTCAACAGTGATTTCATTTGCTTACTGTTTATCAAGCTTAATTCAACAAGCACAAAAATTCTTTCTGGAGGCAAATGACTCTGGTGATGCAAGAAATATGGGCCTTGATTTTGCTGGGAAAGCAGTGTATACTGCTGTATGGGTTGCCGCCTTGTCATTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAAGTGGTTAACTGCTGGTGGTTTGGGCACAGTATTGCTCACTCTTGCAGGTCGTGAGATATTTACAAACTTTCTTTCAAGTATAATGATCCATGCAACTCGGCCATTTATTCTGAACGAGTGGATTCAAACAAAGATTGAAGGTTATGAGGTTTCTGGTACTGTTGAGCATGTAGGCTGGTGGTCACCAACTATTGTGAGAGGTGATGATCGTGAGGCAGTTCATATTCCTAATCACAAATTCACTGTAAATGTTGTGAGAAATCTGAGTCAGAAATCTCATTGGCGTATCAAGAGTTACGTTGCTATCAGTCACTTGGATGTCAACAAAATTAACAGTATTGTGGCTGATATGCGCAAGGTTTTGGCTAAAAATCCTCAAGTAGAGCAGCAAAAATTACACAGAAGGGTGTTTTTGGAGAATGTCAATCCTGAAAATCAGGCTCTTATGATATTAATATCTTGCTTTGTAAAAACTTCACATTTTGAAGAGTACCTCTGCGTTAAGGAGGCAATTCTTTTGGATCTTCTCAGAGTTGTCAGTCATCATCGAGCTCGGCTAGCCACTCCCATCCGCACAGTTCAGAAAATATATGGTGAGGCTGACTCAGAAAATATACCCTTTGGGGACACCATTTTCACTCGATCCAGAGCAACAGCAAATCGTCCATTCCTACTGATAGAACCACCATATAAAGTTAATGGAGAAGATAAAGTTAAGCCTTCAACTCGTTCAACTCGAGCAAATGAGGAAAAGGATGCCAAGGTTGATGAAATTGTGGCATCTGACTCGAAAGGAGAAGAGAATTTTGCAGCTACATCAACCTCCCAACCTGGTGTAAACTCCAAGGATAAATCCAAGTCAATTTCTGAGGCCCAAATCCAGAATATTGGTTCTGATAGTTCAGTTGAGAAGACCTCCAAAACCATGCCGCCTAAAAAGGAAAGTACAGGAGATGCAGGAAAGGGAAGTACAGTTCCAGTATCTAAAAACCTTGCACAAAGTGCTGTGCCTGAAACCTCTCCTGTTACTTCCCATGAGAATATGGGTTCTGATAGTTCAGTTGAGAAGACCTCCAAAACCATGCAGCCTAAAAAGGAAAGTGCAGGAGATGCAGGAAAGGGAAGTACGGTTAATGTATCTAAAAACCTTGCACAAAGTGCTGTGCCTGAAACTTCTCCTGTTACTTCCCAAGAGTCTGGCAGGGGAGAGACCGGTTCTACTTCTTCACATTCAAAGCAAGATGAAGAGAAATCTGCTGTGTCTTCATCATCAGTTAGACCTTCCTTGGAAGAGAATATTCTTCTTGGTGTTGCCCTAGAAGGCTCAAAGCGAACTCTTCCAATTGAGGAAGAAATGACTCCATCTCCTATCCCTGTGGAGTCACAAGAATTTGCTGTACAACGGAATGGGAGTGGACCTCCTGCTAACAAGGATAAGAAGGATGGTCAGATGTCTTCATTTCCAACTGCTAACAAGGATAAGAAGGATTAG 2259 0.4236 MQLSRDVRLNSNSGFRSFRHNPMGVGRLHLVTINLSTCRLKQDSSALHLFRVHAPIRHVPSRCNVFVCRSVLTPGGGNVNLLMKSATVFLTRSYDALCGSPIWLRLIPALGIIAFAVYGLEPLIRLSRTLFLQRNDSSWKKSSSRYMMTSYFQPLLLWTGAMLICRALDPLVLPSETSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLEANDSGDARNMGLDFAGKAVYTAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFILNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNLSQKSHWRIKSYVAISHLDVNKINSIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYGEADSENIPFGDTIFTRSRATANRPFLLIEPPYKVNGEDKVKPSTRSTRANEEKDAKVDEIVASDSKGEENFAATSTSQPGVNSKDKSKSISEAQIQNIGSDSSVEKTSKTMPPKKESTGDAGKGSTVPVSKNLAQSAVPETSPVTSHENMGSDSSVEKTSKTMQPKKESAGDAGKGSTVNVSKNLAQSAVPETSPVTSQESGRGETGSTSSHSKQDEEKSAVSSSSVRPSLEENILLGVALEGSKRTLPIEEEMTPSPIPVESQEFAVQRNGSGPPANKDKKDGQMSSFPTANKDKKD 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3217g00043 752 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 743 IPR045042 -
Gabi3217g00043 752 MobiDBLite consensus disorder prediction 629 663 - -
Gabi3217g00043 752 Pfam Mechanosensitive ion channel 232 439 IPR006685 GO:0016020|GO:0055085
Gabi3217g00043 752 Gene3D - 291 346 IPR023408 -
Gabi3217g00043 752 SUPERFAMILY Sm-like ribonucleoproteins 275 345 IPR010920 -
Gabi3217g00043 752 MobiDBLite consensus disorder prediction 490 752 - -
Gabi3217g00043 752 Gene3D - 185 289 - -
Gabi3217g00043 752 MobiDBLite consensus disorder prediction 522 561 - -
Gabi3217g00043 752 MobiDBLite consensus disorder prediction 490 519 - -
Gabi3217g00043 752 MobiDBLite consensus disorder prediction 577 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3217g00043 Gabi-Chr3217 457105 464003 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3217g00043 1 722 Mechanosensitive Ion Channel Family AT1G58200 52.109 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3217g00043 K22047 - gmx:100796022 1089.72