Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3217g00040 ATGACGAGGGCGAAGATCAAGATTAAGAAAATCGACAACATAACAGCGAGGCAGGTAACATTCTCTAAGAGGAGACGAGGACTCTTCAAGAAAGCTGAAGAGCTTTCTGTGCTTTGCGATGCTGATGTTGGACTCATTGTTTTCTCAGCTACCGGGAAGCTCTTTGATTATGGCAGCTCCAGTACGAAGGACATAATTACAAGGTATAATACGCACTTACAAGGCATCAACAAATTGGACAGACCTTCTCTAGAACTGCAGCTAGACGCTAGCGATAGCGCCAAATTGAATAAGGAAATTGAAGATAGAACGCAACAACTAAGGCGTATGAAAGGCGACGATCTTCAAGGACTAGACCTAAACGAGTTGCAGCAACTGGAGAAAACACTTGAAAAAGGACTCAACCGCGTGATTGAGATAAAGGGTATCGTGTTGGAAGAAAAGAACAAGCAGTTAAAGCAAAAGCTAGCGGAGACGCTTATGGTGGGTATGCTGTGTAAAGCAAAAAGTCCTGTAGTGGTGGAATCGGATATTGGAATGCAAGAAGGTGTCTCATTAGAATCCATGAATAATATAAGCAGTTGCATTAGTGATCCTCCTATTGAGGATGATTCCTCGGACACTTCTCTCAAGTTAGGGTTGCCCTTCTCTAACTGA 657 0.4307 MTRAKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVGLIVFSATGKLFDYGSSSTKDIITRYNTHLQGINKLDRPSLELQLDASDSAKLNKEIEDRTQQLRRMKGDDLQGLDLNELQQLEKTLEKGLNRVIEIKGIVLEEKNKQLKQKLAETLMVGMLCKAKSPVVVESDIGMQEGVSLESMNNISSCISDPPIEDDSSDTSLKLGLPFSN 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3217g00040 218 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Gabi3217g00040 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi3217g00040 218 Coils Coil 93 113 - -
Gabi3217g00040 218 CDD MADS_MEF2_like 12 72 IPR033896 GO:0000977|GO:0045944
Gabi3217g00040 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi3217g00040 218 FunFam Transcription factor, MADS-box 13 83 - -
Gabi3217g00040 218 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Gabi3217g00040 218 Pfam K-box region 92 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi3217g00040 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 154 - -
Gabi3217g00040 218 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi3217g00040 218 MobiDBLite consensus disorder prediction 195 218 - -
Gabi3217g00040 218 ProSiteProfiles K-box domain profile. 86 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi3217g00040 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi3217g00040 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi3217g00040 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi3217g00040 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3217g00040 Gabi-Chr3217 412776 424755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3217g00040 1 216 MADS-box Gene Family AT2G22540 51.883 2.03e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi3217g00040 K-box 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3217g00040 - - gmx:100776749 297.745