Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3217g00037 ATGGGTGGTGTTGTAGCTTCTTTCTTCAAGTTCAAACCATTCAACTTCAGATTCTTCTTCTTCTTCTTCCTCCTCATTCTAATTGTTATATACGCAGAGGCCAACGACACCAGAGAAACGCCAACCCCAAATCCCAATCCTGATGGCACAGAAAAAACCTCCTCCGCGTTCAAACCAGGAATGGCCGTTGTGGTGGCCGTTTTGACAACCATGTTTTCTCTCACCTTCCTCCTCCTCCTCTACATCAAACACTGCAACGGCGCCGGGAATATCGACACCGGAGGAGGAGGTAACATTACAACTTCACGAGCGGTGCCACCTTTGACCGGAAGGAAAAACTCCGGCATTGACCGGTCAATAGTTGAATCTTTACCCATCTTCAGATTCGGAGCACTGAGAGGCCAAAAAGACGGTCTCGATTGCGCTGTTTGTCTCACAAAATTCGAAGCTGCAGAGGTTCTTCGGTTGTTACCAAAATGCAAGCACGCATTCCACGTCGAATGTGTTGATACATGGCTTGATGCACATTCCACTTGCCCTCTATGTCGTTACCGTGTGGATCCAGAAGACATTCTTCTAGTACAGGATCCTGCGAATTCGAAGATTTTAAGGCGTAACAACCAACAACAATATTTGGACATTGAAAGAGGGAGAAACTCGAATCACGAGATTGTAGAGTATCGGCGGAGGCATTCGTCGGTGGGAGAAAGTGAATCGGAACGTCAGAGCAAGAGAACGACGTCGTCGTCGTTTAGGAGGTCATTGGACAGTGCCACGTCGACAAAGAAGAACGAGAGCGTTGGTTGTTTTATCCGTCCCAGAAAAGACGGGATGTTGTTGGCACAAGAGAGGGACAGGACGAGCGTGGAACGGAGGTTGGAGCACCGGATTATTGTGTCGTCCACCCCACACAGGAACGGTGGGGTCCACCATCATCAACGGTGGAGCGATGTGCAAGCGTCGGACTTACTGTATCTGACGTCGGAGATGATGCGGTGGAACACGCGCGGCGCGAGAAGAGTGGTGAACAACTTGGATGAGGACAGTTGGAAGGGGAGGGGTATAATAAATTCGAGAAGCGTGTCTGAAATCACGGGATTGAGCAGGTTCTTGAGCAATAACATTAACAACAACCACAGAGAGTGGGAACAACGACAACAACAAAGGCACATGGAAAGAGAGGAAGGATTAGTGTCGAGGTGGTTGACTTGGATTTCAAGGTCACGGTCACAGCCAGCTGTACGGTAG 1248 0.492 MGGVVASFFKFKPFNFRFFFFFFLLILIVIYAEANDTRETPTPNPNPDGTEKTSSAFKPGMAVVVAVLTTMFSLTFLLLLYIKHCNGAGNIDTGGGGNITTSRAVPPLTGRKNSGIDRSIVESLPIFRFGALRGQKDGLDCAVCLTKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVQDPANSKILRRNNQQQYLDIERGRNSNHEIVEYRRRHSSVGESESERQSKRTTSSSFRRSLDSATSTKKNESVGCFIRPRKDGMLLAQERDRTSVERRLEHRIIVSSTPHRNGGVHHHQRWSDVQASDLLYLTSEMMRWNTRGARRVVNNLDEDSWKGRGIINSRSVSEITGLSRFLSNNINNNHREWEQRQQQRHMEREEGLVSRWLTWISRSRSQPAVR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3217g00037 415 CDD RING-H2_EL5-like 140 183 - -
Gabi3217g00037 415 MobiDBLite consensus disorder prediction 223 268 - -
Gabi3217g00037 415 MobiDBLite consensus disorder prediction 223 247 - -
Gabi3217g00037 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 190 IPR013083 -
Gabi3217g00037 415 Pfam Ring finger domain 140 183 IPR001841 -
Gabi3217g00037 415 MobiDBLite consensus disorder prediction 248 266 - -
Gabi3217g00037 415 FunFam RING-H2 finger protein ATL43 116 190 - -
Gabi3217g00037 415 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Gabi3217g00037 415 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 406 - -
Gabi3217g00037 415 SMART ring_2 141 182 IPR001841 -
Gabi3217g00037 415 SUPERFAMILY RING/U-box 135 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3217g00037 Gabi-Chr3217 366044 367321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3217g00037 54 414 C3H Transcription Factor Family AT5G05810 48.187 5.08e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3217g00037 K19041 - gmx:100794083 360.533