Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3217g00020 ATGGCACCCAGTTTTGATTGTGTTTCAAGCCTCCTTTGTGCAGAGGACAGCAGTGTTTTCGACGATAGTCATTATGGGGGTACGATGGATGTGTACGAGGATTCGTGGCGTCCTAGGTACCATCATGGAAGGAGCGATGACTTTGGTTACCCAGATGAGTTGCCAGTGCAGAGTGATGAGTGCTTGGCGTTGATGGTGGAAAAGGAAAGCCAACACTGGCCTGGTGCCGGTTACTTTAATAGGCTACAGAGTGGGGATTTGGACTTAGGGGCCAGAAAAGAGGCCATTGATTGGATTGAAAAGGTCCGATCGCATTTTGGTTTTGGTCCTCTCTGTGCATATCTATCCATAAATTACTTGGACCGCTTTCTTTCTGCATATGAATTACCAAAGGGAAGAGCTTGGACAATGCAATTGATGGCTGTGGCGTGTTTATCTCTTGCAGCCAAAATAGAAGAGACTGAAGTTCCTCCGTGTCTTGATTTGCAGGTGGGTGAATCCAGGTTTGTATTTGAAGCTAAAACCATACAGAGAATGGAGCTCCTTGTACTGAGCACATTGAAGTGGAGAATGCAACCAATTACTCCTTTCTCCTTCATTGATTATTTCCTTTGCAAGATCAATGATGATCAAAATTCATTAAGATCTTCAATTTTGCAATCCATCCAACTTATACTCAGCACTGTAAAAGGGATTGACTTCTTGGAATTCAAACCATCTGAGATTGCAGCAGCAGTGGCTATATCAGTTGTGGGGGGAACCAAAACAATTGACACTGGGAAAACAATTTCTGTTCTGATTCAATATGTAGAAAAGGAGAGATTATTGAAGTGTGTTAACATGATCCGGGAGCTGTCATCAAACAGTAACTCTGCCAATGATTCAAGTGTTTCTGTCCCTTGTGTGCCGCAAAGCCCAATAGGTGTGTTGGATGTTTTATGCTTCAGCTACAAAAGTGATGAAACAGATGCTGGTTCTTGTGCAAATTCATCACATAATACCCCAGATGCCAAAAGAAGGAAACTAAACAAAACCTGTGGAGCAGAGCTATTGTAG 1056 0.429 MAPSFDCVSSLLCAEDSSVFDDSHYGGTMDVYEDSWRPRYHHGRSDDFGYPDELPVQSDECLALMVEKESQHWPGAGYFNRLQSGDLDLGARKEAIDWIEKVRSHFGFGPLCAYLSINYLDRFLSAYELPKGRAWTMQLMAVACLSLAAKIEETEVPPCLDLQVGESRFVFEAKTIQRMELLVLSTLKWRMQPITPFSFIDYFLCKINDDQNSLRSSILQSIQLILSTVKGIDFLEFKPSEIAAAVAISVVGGTKTIDTGKTISVLIQYVEKERLLKCVNMIRELSSNSNSANDSSVSVPCVPQSPIGVLDVLCFSYKSDETDAGSCANSSHNTPDAKRRKLNKTCGAELL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3217g00020 351 PANTHER CYCLINS 59 288 IPR039361 -
Gabi3217g00020 351 FunFam D6-type cyclin 189 280 - -
Gabi3217g00020 351 SUPERFAMILY Cyclin-like 176 285 IPR036915 -
Gabi3217g00020 351 SUPERFAMILY Cyclin-like 54 191 IPR036915 -
Gabi3217g00020 351 ProSitePatterns Cyclins signature. 92 123 IPR006671 -
Gabi3217g00020 351 Gene3D - 64 280 - -
Gabi3217g00020 351 CDD CYCLIN_AtCycD-like_rpt1 91 189 - -
Gabi3217g00020 351 CDD CYCLIN_AtCycD-like_rpt2 194 282 - -
Gabi3217g00020 351 SMART Cyclin_C_2 194 316 IPR004367 -
Gabi3217g00020 351 Gene3D - 75 192 - -
Gabi3217g00020 351 Pfam Cyclin, C-terminal domain 194 294 IPR004367 -
Gabi3217g00020 351 SMART cyclin_7 97 185 IPR013763 -
Gabi3217g00020 351 FunFam D2/4-type cyclin 75 188 - -
Gabi3217g00020 351 Pfam Cyclin, N-terminal domain 62 191 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3217g00020 Gabi-Chr3217 188825 190730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3217g00020 40 328 Core Cell Cycle Gene Families AT2G22490 47.231 2.27e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3217g00020 K18810 - gmx:547739 498.434