Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3217g00016 ATGGGTTATCTCTCTTGCAATGCTGAGTCTGCCATTAAAACATGTGATCCCCACTGTTGGGATCTCAAGAAAAAAACAATAACCCGCAAACACACTCTCAGGAAGTTTCACTACAGGGATCTCGTCGCCGCCACAAACGGTTTCTCCGCCGATAGTTTCTTAGGCAAAGGCAGCCACGGCAGGGTCTACAGAGCCACCCTGGACGGTGGCAACCTCGTCGTCGCCGTCAAAACAACAAAGCTATCTTCCAAGCCTACAAGCTCACGGAACCACGCCACCAACTGCACCGGTTGCGGTAACTGTACCAGCCCCGCAGAGAACGAGATCGAGATTCTATCCCATGTACCAAGCCCTCGCCTCGTTAACCTCATCGGTTTCTGCACAGACCCAAACGGCAACAAATTAATTGTCGTCGAGTACATGCCAAACGGTTCGCTCCACGATCTATTGCATTCGGCTACTCGACCGCCCGGTTGGACCCGCCGACTCCGGTTCGCTCTCCACGTGGCGAAAGCGGTTCAGGCCCTGCACTCCTCGAACCCACCCGTGATTCACCGAGACATTAAGTCCTCCAACGTTTTAATCGATGAGAACTGGAGCGCCAGGCTCGGTGACTTCGGCCTCGCGCTCAGGGGACACGTGGAGGATGTTCGCGTCAAGTGCACGCCACCCGCGGGGACGTTAGGGTACCTCGACCCCTGCTATCTTGCGCCGGAGGATCTGAGCGCTAAGAGCGACGTCTTCAGTTTTGGGATCTTGTTGTTGGAGATAATCAGCGGCAGGAACGCCATCGATGTTAATTACAGTCCGCCCTCGGTGGTGGACTGGGCGGTGCCGCTCATCAAGCGCGGTGACTTCGCCGGAATCTGTGACCGGCGGATTGGAACTCCGTCGGATCCGGCGTTGATTCGGCAGCTGGCTGTGCTGGCGGTGAGATGCGTGAGATCGACGGCGGAGAAGCGGCCTTCGATGGCGGAAGTGGTGGAGTGTCTTAAACTATTGAGGAAGAGGATTCACGCATCGCGGATATGGAACAGTCTGAGGCGGCGCGTGGCGCGTGTGGAGAGCGTGAGGTGGGAAGAGTATGATTGTGATTGCGATAGGAGTAGTGAGGAAGTTGTGAGGTTAGTGAAGGGTGGGAGCAGAAGGAACAGGAAAGTATCCAGTGTGCCAGGTGTAGGGAATGACAGTGAACCCATCTCCAATAAAGTGGTGAGGTCCAAATCCATTGGTCCTGGTTTTGTGTCTGTGAGAGGGAGTGAGATTAAAATGCGGTTGGATTTGAATCCGGATCTGGGTGGGCACCCGCAACAAACTGGGTATGGGTTTGAGAGAAGAAAGGCAAAAATGGGAGTGATGAGGCTGAACAAGTCCAAGTCTATGGGGGTTTTGCAAGGTCCTCTAATTTTACATAATGGCAGTGAGAATAACAATAATAATGATCCAATTCATTCGGCAATGTCCAAGTTGGTCACTACAAGTAAGTTGGAGAGGAAAATGCTTGAAAAACCGTTAGTTAACTCACATTGGGAGTCTGAGTAA 1542 0.5298 MGYLSCNAESAIKTCDPHCWDLKKKTITRKHTLRKFHYRDLVAATNGFSADSFLGKGSHGRVYRATLDGGNLVVAVKTTKLSSKPTSSRNHATNCTGCGNCTSPAENEIEILSHVPSPRLVNLIGFCTDPNGNKLIVVEYMPNGSLHDLLHSATRPPGWTRRLRFALHVAKAVQALHSSNPPVIHRDIKSSNVLIDENWSARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPEDLSAKSDVFSFGILLLEIISGRNAIDVNYSPPSVVDWAVPLIKRGDFAGICDRRIGTPSDPALIRQLAVLAVRCVRSTAEKRPSMAEVVECLKLLRKRIHASRIWNSLRRRVARVESVRWEEYDCDCDRSSEEVVRLVKGGSRRNRKVSSVPGVGNDSEPISNKVVRSKSIGPGFVSVRGSEIKMRLDLNPDLGGHPQQTGYGFERRKAKMGVMRLNKSKSMGVLQGPLILHNGSENNNNNDPIHSAMSKLVTTSKLERKMLEKPLVNSHWESE 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3217g00016 513 Gene3D Phosphorylase Kinase; domain 1 12 140 - -
Gabi3217g00016 513 PANTHER OS01G0253100 PROTEIN 28 336 - -
Gabi3217g00016 513 FunFam Serine/threonine-protein kinase-like protein 141 345 - -
Gabi3217g00016 513 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Gabi3217g00016 513 SUPERFAMILY Protein kinase-like (PK-like) 30 332 IPR011009 -
Gabi3217g00016 513 Gene3D Transferase(Phosphotransferase) domain 1 141 352 - -
Gabi3217g00016 513 SMART serkin_6 48 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3217g00016 513 Pfam Protein tyrosine and serine/threonine kinase 52 331 IPR001245 GO:0004672|GO:0006468
Gabi3217g00016 513 ProSiteProfiles Protein kinase domain profile. 48 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3217g00016 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3217g00016 Gabi-Chr3217 128066 129709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3217g00016 27 332 Receptor kinase-like Gene Family AT3G59420 40.514 2.91e-65 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gabi3217g00016 PK_Tyr_Ser-Thr 1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3217g00016 - - cam:101503747 676.781