Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3217g00015 ATGGAATTTGATGAGCACGAAGACCAAGAGGACGAGGAGGAGGAAATGGTGCTCCCGGTGGCGCCGCCGCAGCCGGGTTACGAAAACTCGGCGGCGAGGTCCAAAATGGGCCCCGCTGCCGGAGCCGAGGGTGGTGCAGCCACCATGACACCTGGTCGCAAAGGAGGTGGGTCAACAGGGACAGTCAGATATAGGGAATGTCAAAAGAATCATGCCATCGGAATCGGTGGTCACGCCGTCGATGGCTGCTGCGAGTTTTTGGCCGCAGGAGAGGAAGGCACGCTCGAGGCCGTAATTTGCGCTGCCTGTAACTGCCACCGGAATTTTCACCGCAAAGAGATCGACGGCGAAATAACCTCCCATCACCAGCAGCCGCGGCCTCAGCCGCAGTACCACCACCACCACCACCAATTCTCCCCTTACTACAACCGTGCACCGCCACCTCCTGCTATTGGATACCTCCACCACCACTTGATAACTCCACCGGTGTCCCAGCACCGGCCGTTAGCTCTACCACCTACGGCATCGGGAGGGGGATTCAGTAGAGAAGAGGAGGACATGTCCAATCCGAGCAGCAGCGGCGGAGGCGGCTTCGGCGGCGGTGGAGGTAGCTGCAGTGGAACGAAGAAAAGGTTTAGGACTAAGTTCACTCAGGAGCAGAAGGATAAGATGCTGGCATTTGCGGAAGGGTTAGGGTGGAGAATCCAGAAGCATGACCAAGCCGCTGTGGAGCAATTCTGTGCGGATAATTGTGTGAAGAGACATGTTCTCAAGGTTTGGATGCACAATAACAAGCACACTCTTGGTAAGAAACCCTAA 819 0.5653 MEFDEHEDQEDEEEEMVLPVAPPQPGYENSAARSKMGPAAGAEGGAATMTPGRKGGGSTGTVRYRECQKNHAIGIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEITSHHQQPRPQPQYHHHHHQFSPYYNRAPPPPAIGYLHHHLITPPVSQHRPLALPPTASGGGFSREEEDMSNPSSSGGGGFGGGGGSCSGTKKRFRTKFTQEQKDKMLAFAEGLGWRIQKHDQAAVEQFCADNCVKRHVLKVWMHNNKHTLGKKP 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3217g00015 272 MobiDBLite consensus disorder prediction 119 146 - -
Gabi3217g00015 272 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 113 IPR006456 -
Gabi3217g00015 272 MobiDBLite consensus disorder prediction 1 58 - -
Gabi3217g00015 272 SUPERFAMILY Homeodomain-like 196 270 IPR009057 -
Gabi3217g00015 272 MobiDBLite consensus disorder prediction 1 17 - -
Gabi3217g00015 272 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Gabi3217g00015 272 FunFam Zinc-finger homeodomain protein 2 202 270 - -
Gabi3217g00015 272 MobiDBLite consensus disorder prediction 164 209 - -
Gabi3217g00015 272 Pfam ZF-HD protein dimerisation region 62 114 IPR006456 -
Gabi3217g00015 272 NCBIfam homeobox domain, ZF-HD class 209 265 IPR006455 -
Gabi3217g00015 272 Gene3D - 199 269 - -
Gabi3217g00015 272 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 43 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3217g00015 Gabi-Chr3217 108570 109788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3217g00015 10 268 ZF-HD Transcription Factor Family AT4G24660 48.077 1.51e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi3217g00015 ZF-HD_dimer 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3217g00015 - - pvu:PHAVU_009G037900g 382.874