Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3217g00008 ATGGACTTCTCTTGTCACTTCGTATTCTTGATTCTTCAAGTCATCGTGGTTCTGGGTTGTGGGGTGCGATTGGATATTCAAGATAAACATGTGGTAATGGATAATGGCATAGTCCAGGTGACCTTATCAAATCCTGAAGGAATTGTCACAGGAATTCAATATAATGGGCTTGACAATTTGCTCGAAGTTCTTAACGAGGAATCTGACAGAGGGTACTGGGATATTGTATGGGACCAGGGCGGAAATAAAACAACAAAAAAAGGAGCGAAGGGAAAGGGTAAATTTGACAGAATGGAAGCCACAAATTTTACGGTGATAGTGGAAAATGAAGAACAAGTTGAGCTATCGTTTGCCAGAATATGGAATTTCTCTCTCGAGGGGAAGCTTGCGCCACTCAATATTGATAAAAGGTTTATACTGCTTCGTGGTTCCTCTGGGTTCTACACCTATGCCATTTATGAGCATTTGAAGGAATGGCCTGCCTTTGATCTTGACAATACTAGGATTGCATTCAAGCTTCGGAAAGACAAGTTCCATTACATGGTTATAGCAGACGACAGACAAAGATTTATGCCTCTGCCCGATGACCGGTCACCGGAAAGAGGCCAAGTTCTGGCCTACCCAGAGGCTGTCCTGCTTGTCAATCCGGTGGAGCCGGAATTCAAAGGAGAGGTGGATGACAAGTATCAGTACTCGTGCGAGAGCCGAAACAACCGTGTTCATGGCTGGATATGCATCGATCCATCTGAATCCGTTGGATTCTGGCTAATTACGCCCAGCTATGAGTTCCGATCTGCTGGGCCCCTCAAACAATACCTTACTTCCCACGTGGGCCCCACCGTCCTCTCTGTATTTCATAGCACGCATTACTCAGGGGAAGATCTGATAATGAAATTTGGACCCAATGAGCCGTGGAAGAAAGTCTATGGGCCCATATTCGTATACCTTAATCACCTGTCAAATGGGTTTAGCCCGATCAGGCTCTGGGAGGACGCCAAACAACAGATGGTCAATGAAATTGAAAGCTGGCCCTATACATTTCCAGCTTCCGAGGAATTTCTCTCATCTGACCAACGAGGTAAAGTTCAAGGTAGATTGCTTGTCCATGACAGGTACATCCGTGATGCATTCGTCTCGGTTAGCGGTGCTTATGTGGGGTTAGCATCCGCAGGAGATGTTGGATCTTGGCAAAGAGAATCCAAGGGTTACCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTATTGACTTACGTCCTGGGGACTATAATCTGTACTCCTGGGTCACTGGATACATTGGTGATTATCAATATGATAGCGTCATTAACGTAACCTCAGGTTGTGAAATTAATGTGGGTGAGCTTGTTTATGAGCCACCAAGAGATGGCCCTACGTTGTGGGAAATAGGCATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCCGATCCAAATCCCATGTACATTAACAAACTTTATGTCAACCATCCAGACAGGTTTAGGCAATATGGCTTGTGGGAGAGATATGCTGATTTGTATCCTAATCAAGACCTAGTTTACACTGTGGGCATTAGTGACTACAGAAAAGAATGGTTTTTTGCTCAGGTTAACAGGAAGAAAGAAAATAACACGTACCAAGGAACCACATGGCAAATTAATTTCAATCTTGATTATGTGAATACCAATGGAAACTACAAATTGCGAGTGGCTCTGGCATCTGTACATTCTGCTGAGCTACAGATTCGAATAAAGAATTCAGATGCAAACTCACCTTTATTTTCAAGTGGAGTGATTGGAAAGGAGAATACAATAGCCAGACATGGGATTCACGGGCTCTACTGGCTGTACAGCATTGATGTACAAGGCACTCTTCTTGTGCAAGGGAATAATACCATATTTCTAACGCAACATAGCAACACAAGTCCTTTTCAAGGAATTTTGTATGATTATATTCGTTTAGAAGGACCCTGTACATAA 1983 0.4347 MDFSCHFVFLILQVIVVLGCGVRLDIQDKHVVMDNGIVQVTLSNPEGIVTGIQYNGLDNLLEVLNEESDRGYWDIVWDQGGNKTTKKGAKGKGKFDRMEATNFTVIVENEEQVELSFARIWNFSLEGKLAPLNIDKRFILLRGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKLRKDKFHYMVIADDRQRFMPLPDDRSPERGQVLAYPEAVLLVNPVEPEFKGEVDDKYQYSCESRNNRVHGWICIDPSESVGFWLITPSYEFRSAGPLKQYLTSHVGPTVLSVFHSTHYSGEDLIMKFGPNEPWKKVYGPIFVYLNHLSNGFSPIRLWEDAKQQMVNEIESWPYTFPASEEFLSSDQRGKVQGRLLVHDRYIRDAFVSVSGAYVGLASAGDVGSWQRESKGYQFWTITDDKGYFSIIDLRPGDYNLYSWVTGYIGDYQYDSVINVTSGCEINVGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINKLYVNHPDRFRQYGLWERYADLYPNQDLVYTVGISDYRKEWFFAQVNRKKENNTYQGTTWQINFNLDYVNTNGNYKLRVALASVHSAELQIRIKNSDANSPLFSSGVIGKENTIARHGIHGLYWLYSIDVQGTLLVQGNNTIFLTQHSNTSPFQGILYDYIRLEGPCT 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3217g00008 660 Pfam Rhamnogalacturonate lyase family 25 225 IPR010325 -
Gabi3217g00008 660 SUPERFAMILY Starch-binding domain-like 356 454 IPR013784 GO:0030246
Gabi3217g00008 660 Pfam Polysaccharide lyase family 4, domain III 467 655 IPR029411 -
Gabi3217g00008 660 Gene3D - 465 656 - -
Gabi3217g00008 660 Gene3D - 24 306 IPR014718 GO:0030246
Gabi3217g00008 660 SUPERFAMILY Galactose-binding domain-like 464 656 IPR008979 -
Gabi3217g00008 660 CDD RGL4_C 469 656 - -
Gabi3217g00008 660 FunFam Rhamnogalacturonate lyase B 355 454 - -
Gabi3217g00008 660 CDD RGL4_N 27 317 - -
Gabi3217g00008 660 Gene3D - 355 454 - -
Gabi3217g00008 660 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 27 659 - -
Gabi3217g00008 660 CDD RGL4_M 358 457 IPR029413 -
Gabi3217g00008 660 Pfam Polysaccharide lyase family 4, domain II 381 453 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3217g00008 Gabi-Chr3217 42956 48104 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3217g00008 22 659 Polysaccharide Lyase AT1G09890 66.459 0.0 888
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3217g00008 K18195 - gmx:100786488 1190.25