Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3217g00007 ATGCCGCCACAGGGGGTGCAACTGAGTATTCAAGATCATCATGTTGTGATGGACAATGGCATACTAAGAGTCACCTTATCAAACCCTGAGGGAATTGTCACTGGAATACAGTATAATAACATTAACAACTTGCTTGAAGTTTTGAATGAAGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCGCCAGCAAGTACAGGAACCACTGGTGGATTTGATGTGATAAAAGGAACCACTTTCAAAGTTATGGTTGAAACTGAGGACCAAGTTGAGTTATCCTTCACCAGGACGTGGGACACTTCCCTTGAGGGCAAGCTGGTTCCTTTAAATATTGATAAAAGGTTCATAATGCTTCGTGATTCTTCCGGCTTCTACTCCTATGCAATTTATGAGCACTTGGAGGATTGGCCTGCTTTCAATCTTGACGAAACAAGAATCGCTTTCAAGCTTAGAAAAGAAAAGTTCCATTATATGGCGATGGCAGATAATAGACAAAGAAACATGCCTCTTCCGGATGACCGATTACCACCAAGAGGCCAAGCCCTTGCTTACCCAGAAGCAGTTCTACTTGTCAATCCTATCGAACCTGAACTTAAAGGAGAGGTGGATGACAAGTACCAATATTCATGCGACAACAAAGATAGCCAAGTTCACGGATGGATCTGCATGGATCCGGCAGTGGGATTCTGGCTAATTACACCTACCAATGAGTTTCGATCTGGTGGACCCGTCAAACAAAACTTAACTTCCCACGTGGGACCTACCACGCTTGCTGTGTTTCTCAGTGCTCATTATAGCGGAGAGGATCTGGTGCCTAAGTTCAAAGCTGGAGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATCTATTTGAATTCTCCGTATGATGGAAGTGACCCTGACCCCCTTAAGCTATGGGAAGACGCTAAACTGCAGATGTTGGTGGAAGTTCAAAGCTGGCCTTACAGTTTTCCTGAGTCAGAGGATTTCCCAAAGTGGGACAAACGTGGTCATGTTAGTGGCACGCTATTGGTTAGAGAGAGGCATATAAGCGGTGATTCTATATCAGCGAAAGGTGCTTATGTTGGCTTAGCTCCACCAGGAGACGTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTCTGGGCTAAATCAGGCGATGATGGCTATTTCTCCATCAGCAATATACGTGCTGGCGACTATAATGTTTATGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGATGTAGTTTTGAGCATAACAGAAGGTAGTGACATTGACATTGGTAATCTTGTATTTGAACCTCCAAGAGATGGTCCAACATTGTGGGAAATAGGCATCCCTGATCGCTCAGCTGCTGAATTCTATGTTCCTGATCCAAATCCCAAATATATCAACAAACTCTATATTAATCATCCTGACAAGTTTAGGCAGTATGGGTTATGGGAGAGATATGCAGAATTATACCCTGACAAAGACTTGATCTACACAGTAGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACATATCAAGGAACCACATGGCAAATCAAGTTTCAGCTTGGTAAAGTGAACAAAAGCAGTAGCTATAAACTCCGAGTGGCTTTAGCATCGGCAACATTTTCTGAACTTCAGGTTCGAGTTAATGATCCAAAGGCGAATCGTCCTTTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCAATTGCTAGGCACGGAATTCATGGGCTTTATTGGCTTTTCAATGTGGACATACCAGGTACTCGACTTGTTGAAGGAGATAATACCATCTTTTTGACACAGGCAAGAGGTAATGGCCCATTTCTGGCCATTATGTATGATTATATTCGTTTGGAAGGTCCAGCCACCGTTTAG 1920 0.4271 MPPQGVQLSIQDHHVVMDNGILRVTLSNPEGIVTGIQYNNINNLLEVLNEESNRGYWDLVWSSPASTGTTGGFDVIKGTTFKVMVETEDQVELSFTRTWDTSLEGKLVPLNIDKRFIMLRDSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKEKFHYMAMADNRQRNMPLPDDRLPPRGQALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPTNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPVFIYLNSPYDGSDPDPLKLWEDAKLQMLVEVQSWPYSFPESEDFPKWDKRGHVSGTLLVRERHISGDSISAKGAYVGLAPPGDVGSWQRECKNYQFWAKSGDDGYFSISNIRAGDYNVYAWVPGFIGDYKYDVVLSITEGSDIDIGNLVFEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYINHPDKFRQYGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFQLGKVNKSSSYKLRVALASATFSELQVRVNDPKANRPLFSSGLIGRDNSIARHGIHGLYWLFNVDIPGTRLVEGDNTIFLTQARGNGPFLAIMYDYIRLEGPATV 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3217g00007 639 CDD RGL4_M 336 435 IPR029413 -
Gabi3217g00007 639 SUPERFAMILY Galactose-binding domain-like 442 634 IPR008979 -
Gabi3217g00007 639 CDD RGL4_N 8 302 - -
Gabi3217g00007 639 Pfam Polysaccharide lyase family 4, domain II 359 431 IPR029413 -
Gabi3217g00007 639 Gene3D - 335 431 - -
Gabi3217g00007 639 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 637 - -
Gabi3217g00007 639 Gene3D - 443 634 - -
Gabi3217g00007 639 Pfam Polysaccharide lyase family 4, domain III 445 633 IPR029411 -
Gabi3217g00007 639 Gene3D - 5 312 IPR014718 GO:0030246
Gabi3217g00007 639 FunFam Rhamnogalacturonate lyase B 333 432 - -
Gabi3217g00007 639 CDD RGL4_C 447 634 - -
Gabi3217g00007 639 SUPERFAMILY Galactose mutarotase-like 11 295 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gabi3217g00007 639 Pfam Rhamnogalacturonate lyase family 9 203 IPR010325 -
Gabi3217g00007 639 SUPERFAMILY Starch-binding domain-like 357 431 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3217g00007 Gabi-Chr3217 31769 36946 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3217g00007 6 637 Polysaccharide Lyase AT1G09890 71.722 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3217g00007 K18195 - gmx:100793563 1209.13