Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3217g00006 ATGCCGCCACAGGGGGTGCAACTGAGTATTCAAGATCATCATGTTGTGATGGACAATGGCATACTAAGAGTCACCTTATCAAACCCTGAGGGAATTGTCACTGGAATACAGTATAATAACATTAACAACTTGCTTGAAGTTTTGAATGAAGAATCTAATAGAGGGTATACTTTGTATTGGGACCTTGTTTGGAGCTCGCCAGCAAGTACAGGAACCACTGGTGGATTTGATGTGATAAAAGGAACCACTTTCAAAGTTATGGTTGAAACTGAGGACCAAGTTGAGTTATCCTTCACCAGGACGTGGGACACTTCCCTTGAGGGCAAGCTGGTTCCTTTAAATATTGATAAAAGGTTCATAATGCTTCGTGATTCTTCCGGCTTCTACTCCTATGCAATTTATGAGCACTTGGAGGATTGGCCTGCTTTCAATCTTGACGAAACAAGAATCGCTTTCAAGCTTAGAAAAGAAAAGTTCCATTATATGGCGATGGCAGATAATAGACAAAGAAACATGCCTCTTCCGGATGACCGATTACCACCAAGAGGCCAAGCCCTTGCTTACCCAGAAGCAGTTCTACTTGTCAATCCTATCGAACCTGAACTTAAAGGAGAGGTGGATGACAAGTACCAATATTCATGCGACAACAAAGATAGCCAAGTTCACGGATGGATCTGCATGGATCCGGCAGTGGGATTCTGGCTAATTACACCTACCAATGAGTTTCGATCTGGTGGACCCGTCAAACAAAACTTAACTTCCCACGTGGGACCTACCACGCTTGCTGTGTTTCTCAGTGCTCATTATAGCGGAGAGGATCTGGTGCCTAAGTTCAAAGCTGGAGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATCTATTTGAATTCTCCGTATGATGGAAGTGACCCTGACCCCCTTAAGCTATGGGAAGACGCTAAACTGCAGATGTTGGTGGAAGTTCAAAGCTGGCCTTACAGTTTTCCTGAGTCAGAGGATTTCCCAAAGTGGGACAAACGTGGTCATGTTAGTGGCACGCTATTGGTTAGAGAGAGGCATATAAGCGGTGATTCTATATCAGCGAAAGGTGCTTATGTTGGCTTAGCTCCACCAGGAGACGTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTCTGGGCTAAATCAGGCGATGATGGCTATTTCTCCATCAGCAATATACGTGCTGGCGACTATAATGTTTATGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGATGTAGTTTTGAGCATAACAGAAGGTAGTGACATTGACATTGGTAATCTTGTATTTGAACCTCCAAGAGATGGTCCAACATTGTGGGAAATAGGCATCCCTGATCGCTCAGCTGCTGAATTCTATGTTCCTGATCCAAATCCCAAATATATCAACAAACTCTATATTAATCATCCTGACAAGTTTAGGCAGTATGGGTTATGGGAGAGATATGCAGAATTATACCCTGACAAAGACTTGATCTACACAGTAGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACATATCAAGGAACCACATGGCAAATCAAGTTTCAGCTTGGTAAAGTGAACAAAAGCAGTAGCTATAAACTCCGAGTGGCTTTAGCATCGGCAACATTTTCTGAACTTCAGGTTCGAGTTAATGATCCAAAGGCGAATCGTCCTTTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCAATTGCTAGGCACGGAATTCATGGGCTTTATTGGCTTTTCAATGTGGACATACCAGGTACTCGACTTGTTGAAGGAGATAATACCATCTTTTTGACACAGGCAAGAGGTAATGGCCCATTTCTGGCCATTATGTATGATTATATTCGTTTGGAAGGTCCAGCCACCGTTTAG 1929 0.4261 MPPQGVQLSIQDHHVVMDNGILRVTLSNPEGIVTGIQYNNINNLLEVLNEESNRGYTLYWDLVWSSPASTGTTGGFDVIKGTTFKVMVETEDQVELSFTRTWDTSLEGKLVPLNIDKRFIMLRDSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKEKFHYMAMADNRQRNMPLPDDRLPPRGQALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPTNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPVFIYLNSPYDGSDPDPLKLWEDAKLQMLVEVQSWPYSFPESEDFPKWDKRGHVSGTLLVRERHISGDSISAKGAYVGLAPPGDVGSWQRECKNYQFWAKSGDDGYFSISNIRAGDYNVYAWVPGFIGDYKYDVVLSITEGSDIDIGNLVFEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYINHPDKFRQYGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFQLGKVNKSSSYKLRVALASATFSELQVRVNDPKANRPLFSSGLIGRDNSIARHGIHGLYWLFNVDIPGTRLVEGDNTIFLTQARGNGPFLAIMYDYIRLEGPATV 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3217g00006 642 SUPERFAMILY Starch-binding domain-like 360 434 IPR013784 GO:0030246
Gabi3217g00006 642 Gene3D - 446 637 - -
Gabi3217g00006 642 Gene3D - 5 315 IPR014718 GO:0030246
Gabi3217g00006 642 Pfam Polysaccharide lyase family 4, domain III 448 636 IPR029411 -
Gabi3217g00006 642 Gene3D - 338 434 - -
Gabi3217g00006 642 CDD RGL4_N 8 305 - -
Gabi3217g00006 642 SUPERFAMILY Galactose-binding domain-like 445 637 IPR008979 -
Gabi3217g00006 642 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 640 - -
Gabi3217g00006 642 Pfam Rhamnogalacturonate lyase family 9 206 IPR010325 -
Gabi3217g00006 642 CDD RGL4_C 450 637 - -
Gabi3217g00006 642 FunFam Rhamnogalacturonate lyase B 336 435 - -
Gabi3217g00006 642 CDD RGL4_M 339 438 IPR029413 -
Gabi3217g00006 642 SUPERFAMILY Galactose mutarotase-like 143 298 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gabi3217g00006 642 Pfam Polysaccharide lyase family 4, domain II 362 434 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3217g00006 Gabi-Chr3217 31769 36946 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3217g00006 6 640 Polysaccharide Lyase AT1G09890 71.384 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3217g00006 K18195 - gmx:100793563 1203.73