Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3217g00005 ATGCCGCCACAGGGGGTGCAACTGAGTATTCAAGATCATCATGTTGTGATGGACAATGGCATACTAAGAGTCACCTTATCAAACCCTGAGGGAATTGTCACTGGAATACAGTATAATAACATTAACAACTTGCTTGAAGTTTTGAATGAAGAATCTAATAGAGGGTATACTTTACAAAGTCGTATTTATTTTTACAAACTAGGGAACTTGGTTTGGTATTGGGACCTTGTTTGGAGCTCGCCAGCAAGTACAGGAACCACTGGTGGATTTGATGTGATAAAAGGAACCACTTTCAAAGTTATGGTTGAAACTGAGGACCAAGTTGAGTTATCCTTCACCAGGACGTGGGACACTTCCCTTGAGGGCAAGCTGGTTCCTTTAAATATTGATAAAAGGTTCATAATGCTTCGTGATTCTTCCGGCTTCTACTCCTATGCAATTTATGAGCACTTGGAGGATTGGCCTGCTTTCAATCTTGACGAAACAAGAATCGCTTTCAAGCTTAGAAAAGAAAAGTTCCATTATATGGCGATGGCAGATAATAGACAAAGAAACATGCCTCTTCCGGATGACCGATTACCACCAAGAGGCCAAGCCCTTGCTTACCCAGAAGCAGTTCTACTTGTCAATCCTATCGAACCTGAACTTAAAGGAGAGGTGGATGACAAGTACCAATATTCATGCGACAACAAAGATAGCCAAGTTCACGGATGGATCTGCATGGATCCGGCAGTGGGATTCTGGCTAATTACACCTACCAATGAGTTTCGATCTGGTGGACCCGTCAAACAAAACTTAACTTCCCACGTGGGACCTACCACGCTTGCTGTGTTTCTCAGTGCTCATTATAGCGGAGAGGATCTGGTGCCTAAGTTCAAAGCTGGAGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATCTATTTGAATTCTCCGTATGATGGAAGTGACCCTGACCCCCTTAAGCTATGGGAAGACGCTAAACTGCAGATGTTGGTGGAAGTTCAAAGCTGGCCTTACAGTTTTCCTGAGTCAGAGGATTTCCCAAAGTGGGACAAACGTGGTCATGTTAGTGGCACGCTATTGGTTAGAGAGAGGCATATAAGCGGTGATTCTATATCAGCGAAAGGTGCTTATGTTGGCTTAGCTCCACCAGGAGACGTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTCTGGGCTAAATCAGGCGATGATGGCTATTTCTCCATCAGCAATATACGTGCTGGCGACTATAATGTTTATGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGATGTAGTTTTGAGCATAACAGAAGGTAGTGACATTGACATTGGTAATCTTGTATTTGAACCTCCAAGAGATGGTCCAACATTGTGGGAAATAGGCATCCCTGATCGCTCAGCTGCTGAATTCTATGTTCCTGATCCAAATCCCAAATATATCAACAAACTCTATATTAATCATCCTGACAAGTTTAGGCAGTATGGGTTATGGGAGAGATATGCAGAATTATACCCTGACAAAGACTTGATCTACACAGTAGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACATATCAAGGAACCACATGGCAAATCAAGTTTCAGCTTGGTAAAGTGAACAAAAGCAGTAGCTATAAACTCCGAGTGGCTTTAGCATCGGCAACATTTTCTGAACTTCAGGTTCGAGTTAATGATCCAAAGGCGAATCGTCCTTTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCAATTGCTAGGCACGGAATTCATGGGCTTTATTGGCTTTTCAATGTGGACATACCAGGTACTCGACTTGTTGAAGGAGATAATACCATCTTTTTGACACAGGCAAGAGGTAATGGCCCATTTCTGGCCATTATGTATGATTATATTCGTTTGGAAGGTCCAGCCACCGTTTAG 1971 0.4236 MPPQGVQLSIQDHHVVMDNGILRVTLSNPEGIVTGIQYNNINNLLEVLNEESNRGYTLQSRIYFYKLGNLVWYWDLVWSSPASTGTTGGFDVIKGTTFKVMVETEDQVELSFTRTWDTSLEGKLVPLNIDKRFIMLRDSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKEKFHYMAMADNRQRNMPLPDDRLPPRGQALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPTNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPVFIYLNSPYDGSDPDPLKLWEDAKLQMLVEVQSWPYSFPESEDFPKWDKRGHVSGTLLVRERHISGDSISAKGAYVGLAPPGDVGSWQRECKNYQFWAKSGDDGYFSISNIRAGDYNVYAWVPGFIGDYKYDVVLSITEGSDIDIGNLVFEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYINHPDKFRQYGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFQLGKVNKSSSYKLRVALASATFSELQVRVNDPKANRPLFSSGLIGRDNSIARHGIHGLYWLFNVDIPGTRLVEGDNTIFLTQARGNGPFLAIMYDYIRLEGPATV 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3217g00005 656 SUPERFAMILY Galactose-binding domain-like 459 651 IPR008979 -
Gabi3217g00005 656 CDD RGL4_C 464 651 - -
Gabi3217g00005 656 CDD RGL4_M 353 452 IPR029413 -
Gabi3217g00005 656 Gene3D - 460 651 - -
Gabi3217g00005 656 SUPERFAMILY Galactose mutarotase-like 158 312 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gabi3217g00005 656 Pfam Polysaccharide lyase family 4, domain II 376 448 IPR029413 -
Gabi3217g00005 656 Gene3D - 5 329 IPR014718 GO:0030246
Gabi3217g00005 656 Pfam Polysaccharide lyase family 4, domain III 462 650 IPR029411 -
Gabi3217g00005 656 SUPERFAMILY Starch-binding domain-like 374 448 IPR013784 GO:0030246
Gabi3217g00005 656 Gene3D - 352 448 - -
Gabi3217g00005 656 CDD RGL4_N 8 319 - -
Gabi3217g00005 656 Pfam Rhamnogalacturonate lyase family 9 220 IPR010325 -
Gabi3217g00005 656 FunFam Rhamnogalacturonate lyase B 350 449 - -
Gabi3217g00005 656 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3217g00005 Gabi-Chr3217 31769 36946 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3217g00005 6 654 Polysaccharide Lyase AT1G09890 69.846 0.0 941
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3217g00005 K18195 - gmx:100793563 1198.34