Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3217g00004 ATGTCCGCCCCAGGGGTACGGTTGCACATCCAAGACCACCATGTGGTGATGGATAATGGCATACTCCAAGTTACGTTATCAAATCCAGATGGAATTGTCACTGGGATACGATATAATGGTGTTGACAATTTGCTTGAAGTTCTCAACAAGGAGACTAATAGAGGGTACTGGGACCTTGTTTGGAGTGCACCAGGAAGCAAAGGAATCTTTGATGTGATTAAAGGAACGTGTTTTAAAGTTATAGTTCAAAATGAGGAGCAGGTGGAGCTTTCGTTCATGAGAATGTGGGATCCTTCTCTTGAGGGAAAGTTTGTCCCCTTAAATATTGACAAAAGATTTGTAATGCTCCGTGGTTCATCGGGCTTCTACTCTTATGGAATTTATGAACACTTAAATGGATGGCCAGATTTTGATCTAAGTGAAACAAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCATTACATGGCTATGGCAGACAATAGGCGAAGGATTATGCCTTTTCCGGATGACCGGTTACCAGGAAGATGCCAAACCTTGGGCTACCCAGAAGCTGTCCTACTAGTCAATCCCAAGGATCCACAATTGAAAGGAGAGGTGGATGACAAGTATCAGTATTCATGTGAAAACATAGATAATAAAGTCCATGGCTGGATATCTTTCAGTCCACCAGTGGGATTTTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAACAGAATTTGACCTCTCATGTAGGCCCCACCACGCTTGCAATGTTTCTTAGTGGTCACTATGCGGGACAAGACTTGGTACCCAAATTTAGAGGTGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTATATATTTATCTTAATTCTGGATCAATTGGTGATGACCCACTTTGGCTATGGGAGGATGCAAAAATACAGATGACGACTGAAGTTCAAAGTTGGCCATATATTTTCCCAGCTTCAGAGGATTATTTAAAATCATATCAACGGGGCAACGTTAGTGGCAGATTACTTGTCTTAGACAGGTACATCAGCACTGACTTAATATCAGCAAATGCTGCTTATGTTGGTCTGGCCCCACCAGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGGCCAGAGCAGATGAGAATGGATTTTTTACAATTAGCAATATACGTACAGGCGACTATAACCTTTTTGCTTGGGTACCTGGCTTTGTTGGGGACTTCAGATTTGATGATTTGATGAAAATAACCCCAGGTTCTAATATTGAATTGGGTGACCTTGTATATGAGCCTCCAAGGGATGGTCCCACATTGTGGGAAATAGGTATTCCTGATAGATCCGCCGCAGAATTTTATGTTCCTGATCCCAATCCACAATATATTAATAAGCTTTTCATCAACCATCCTGACAGATTCAGGCAGTATGGATTGTGGGACAGGTATACAGAATTGTATCCTGATGCAGATTTGATTTACACAATTGGTGTCAGTGACTATACGAAGGATTGGTTTTTTGCTCAGGCTCCCAGAAAAAAAGAGGATAACACTCATCAAGGAACAACTTGGCAAATCAAGTTTGAAGTCAGTAGTGTGGTTCGGGAAAGTACATATAAACTGAGAGTTGCACTTGCATCTGCAACATTAGCTGAATTGCAGATTCGAATAAATGATCCCAATGCAAGGCGTCCCCTATTTACCACTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGAATTCATGGACTCTATTGGCTGTACAATGTGAATATACCAGGTTCTTTTCTTATAGAGGGCACGAATACTATATATTTTACGCAACCAAGATGCACCAGTCCCTTCCAGGGTATCATGTATGATTATATTCGTTTGGAAGGCCCACCCTGTTTCAAAGAAGATATTTAA 1917 0.4168 MSAPGVRLHIQDHHVVMDNGILQVTLSNPDGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGSKGIFDVIKGTCFKVIVQNEEQVELSFMRMWDPSLEGKFVPLNIDKRFVMLRGSSGFYSYGIYEHLNGWPDFDLSETRITFKLRKDKFHYMAMADNRRRIMPFPDDRLPGRCQTLGYPEAVLLVNPKDPQLKGEVDDKYQYSCENIDNKVHGWISFSPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSGHYAGQDLVPKFRGGEPWKKVFGPVYIYLNSGSIGDDPLWLWEDAKIQMTTEVQSWPYIFPASEDYLKSYQRGNVSGRLLVLDRYISTDLISANAAYVGLAPPGDAGSWQRECKDYQFWARADENGFFTISNIRTGDYNLFAWVPGFVGDFRFDDLMKITPGSNIELGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPQYINKLFINHPDRFRQYGLWDRYTELYPDADLIYTIGVSDYTKDWFFAQAPRKKEDNTHQGTTWQIKFEVSSVVRESTYKLRVALASATLAELQIRINDPNARRPLFTTGLIGRDNSIARHGIHGLYWLYNVNIPGSFLIEGTNTIYFTQPRCTSPFQGIMYDYIRLEGPPCFKEDI 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3217g00004 638 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Gabi3217g00004 638 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Gabi3217g00004 638 Pfam Polysaccharide lyase family 4, domain II 355 426 IPR029413 -
Gabi3217g00004 638 Gene3D - 438 629 - -
Gabi3217g00004 638 Gene3D - 7 307 IPR014718 GO:0030246
Gabi3217g00004 638 Pfam Rhamnogalacturonate lyase family 9 200 IPR010325 -
Gabi3217g00004 638 FunFam Rhamnogalacturonate lyase B 328 427 - -
Gabi3217g00004 638 CDD RGL4_C 442 629 - -
Gabi3217g00004 638 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 632 - -
Gabi3217g00004 638 SUPERFAMILY Galactose mutarotase-like 13 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gabi3217g00004 638 CDD RGL4_N 6 293 - -
Gabi3217g00004 638 CDD RGL4_M 331 430 IPR029413 -
Gabi3217g00004 638 Gene3D - 328 424 - -
Gabi3217g00004 638 SUPERFAMILY Starch-binding domain-like 329 426 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3217g00004 Gabi-Chr3217 23023 30253 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3217g00004 1 632 Polysaccharide Lyase AT1G09910 71.519 0.0 974
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3217g00004 K18195 - gmx:100814185 1222.99