Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3217g00003 ATGTCCGCCCCAGGGGTACGGTTGCACATCCAAGACCACCATGTGGTGATGGATAATGGCATACTCCAAGTTACGTTATCAAATCCAGATGGAATTGTCACTGGGATACGATATAATGGTGTTGACAATTTGCTTGAAGTTCTCAACAAGGAGACTAATAGAGGGTACTGGGACCTTGTTTGGAGTGCACCAGGAAGCAAAGGAATCTTTGATGTGATTAAAGGAACGTGTTTTAAAGTTATAGTTCAAAATGAGGAGCAGGTGGAGCTTTCGTTCATGAGAATGTGGGATCCTTCTCTTGAGGGAAAGTTTGTCCCCTTAAATATTGACAAAAGTGGTTCATCGGGCTTCTACTCTTATGGAATTTATGAACACTTAAATGGATGGCCAGATTTTGATCTAAGTGAAACAAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCATTACATGGCTATGGCAGACAATAGGCGAAGGATTATGCCTTTTCCGGATGACCGGTTACCAGGAAGATGCCAAACCTTGGGCTACCCAGAAGCTGTCCTACTAGTCAATCCCAAGGATCCACAATTGAAAGGAGAGGTGGATGACAAGTATCAGTATTCATGTGAAAACATAGATAATAAAGTCCATGGCTGGATATCTTTCAGTCCACCAGTGGGATTTTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAACAGAATTTGACCTCTCATGTAGGCCCCACCACGCTTGCAATGTTTCTTAGTGGTCACTATGCGGGACAAGACTTGGTACCCAAATTTAGAGGTGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTATATATTTATCTTAATTCTGGATCAATTGGTGATGACCCACTTTGGCTATGGGAGGATGCAAAAATACAGATGACGACTGAAGTTCAAAGTTGGCCATATATTTTCCCAGCTTCAGAGGATTATTTAAAATCATATCAACGGGGCAACGTTAGTGGCAGATTACTTGTCTTAGACAGGTACATCAGCACTGACTTAATATCAGCAAATGCTGCTTATGTTGGTCTGGCCCCACCAGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGGCCAGAGCAGATGAGAATGGATTTTTTACAATTAGCAATATACGTACAGGCGACTATAACCTTTTTGCTTGGGTACCTGGCTTTGTTGGGGACTTCAGATTTGATGATTTGATGAAAATAACCCCAGGTTCTAATATTGAATTGGGTGACCTTGTATATGAGCCTCCAAGGGATGGTCCCACATTGTGGGAAATAGGTATTCCTGATAGATCCGCCGCAGAATTTTATGTTCCTGATCCCAATCCACAATATATTAATAAGCTTTTCATCAACCATCCTGACAGATTCAGGCAGTATGGATTGTGGGACAGGTATACAGAATTGTATCCTGATGCAGATTTGATTTACACAATTGGTGTCAGTGACTATACGAAGGATTGGTTTTTTGCTCAGGCTCCCAGAAAAAAAGAGGATAACACTCATCAAGGAACAACTTGGCAAATCAAGTTTGAAGTCAGTAGTGTGGTTCGGGAAAGTACATATAAACTGAGAGTTGCACTTGCATCTGCAACATTAGCTGAATTGCAGATTCGAATAAATGATCCCAATGCAAGGCGTCCCCTATTTACCACTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGAATTCATGGACTCTATTGGCTGTACAATGTGAATATACCAGGTTCTTTTCTTATAGAGGGCACGAATACTATATATTTTACGCAACCAAGATGCACCAGTCCCTTCCAGGGTATCATGTATGATTATATTCGTTTGGAAGGCCCACCCTGTTTCAAAGAAGATATTTAA 1902 0.4169 MSAPGVRLHIQDHHVVMDNGILQVTLSNPDGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGSKGIFDVIKGTCFKVIVQNEEQVELSFMRMWDPSLEGKFVPLNIDKSGSSGFYSYGIYEHLNGWPDFDLSETRITFKLRKDKFHYMAMADNRRRIMPFPDDRLPGRCQTLGYPEAVLLVNPKDPQLKGEVDDKYQYSCENIDNKVHGWISFSPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSGHYAGQDLVPKFRGGEPWKKVFGPVYIYLNSGSIGDDPLWLWEDAKIQMTTEVQSWPYIFPASEDYLKSYQRGNVSGRLLVLDRYISTDLISANAAYVGLAPPGDAGSWQRECKDYQFWARADENGFFTISNIRTGDYNLFAWVPGFVGDFRFDDLMKITPGSNIELGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPQYINKLFINHPDRFRQYGLWDRYTELYPDADLIYTIGVSDYTKDWFFAQAPRKKEDNTHQGTTWQIKFEVSSVVRESTYKLRVALASATLAELQIRINDPNARRPLFTTGLIGRDNSIARHGIHGLYWLYNVNIPGSFLIEGTNTIYFTQPRCTSPFQGIMYDYIRLEGPPCFKEDI 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3217g00003 633 Gene3D - 7 299 IPR014718 GO:0030246
Gabi3217g00003 633 Pfam Polysaccharide lyase family 4, domain II 350 421 IPR029413 -
Gabi3217g00003 633 CDD RGL4_C 437 624 - -
Gabi3217g00003 633 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 627 - -
Gabi3217g00003 633 Pfam Rhamnogalacturonate lyase family 9 195 IPR010325 -
Gabi3217g00003 633 Gene3D - 433 624 - -
Gabi3217g00003 633 Pfam Polysaccharide lyase family 4, domain III 435 623 IPR029411 -
Gabi3217g00003 633 SUPERFAMILY Starch-binding domain-like 324 421 IPR013784 GO:0030246
Gabi3217g00003 633 CDD RGL4_M 326 425 IPR029413 -
Gabi3217g00003 633 SUPERFAMILY Galactose mutarotase-like 13 291 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gabi3217g00003 633 SUPERFAMILY Galactose-binding domain-like 432 624 IPR008979 -
Gabi3217g00003 633 CDD RGL4_N 6 288 - -
Gabi3217g00003 633 Gene3D - 323 419 - -
Gabi3217g00003 633 FunFam Rhamnogalacturonate lyase B 323 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3217g00003 Gabi-Chr3217 23021 30253 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3217g00003 1 627 Polysaccharide Lyase AT1G09910 70.728 0.0 957
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3217g00003 K18195 - gmx:100814185 1197.96