Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3215g00039 ATGGCTCCTAGTTCGGCTCCTGCAGTATCTATTGAACCAGAGTTGTGCCCTCATGCAGTAATCGACTGGTACAAATTAACAGGATCAACAGATTATAGGCGAGGTAGGGGGAAAAGAGACCTATCCTTAAAAGCAAAGCAACATCTATGTGCTTTGGGTTGGAATTTGTGGTACATTGATAAGCAAGGTAGATGGGAATTGCGTTATACATCACCCATCAATAGCAGGAACCATATTTCTCTCAGAAAGGCATGCGAAAGCTGCATACGAGAGGGAGGTTGTGGGCCTCAAAATGTTCCCTTGATTCTGGAAACAAAGGGTCTTCAAGTTGAGCGTGATCATGATTATCAGCCTTCAACAACTACAGCCATGTCATCATCTTCTGCACAGCCACAAGAACAACCAAGAACATGCAAGAAACCAAGTGCAAGAGCGCAGCCCAGAACATGCAAGAAAAAAGAAAGGGAGTCTTTTGATGATGATGATGAGGTGGATCACTCTCAACCCACGAGTGAGCTTGATCAGGCCTCTTCCACTACAGTGATTTCATCTTCTGCACAAGCACATGTGGTACCAAGAAAATCCAAGAAACAGAGGGCTGAGCCAAAAAAATCCAAGAAACGACAAAGGGAGTCATGTGATGATGGTGATGATGCTGAGTGGAATCCAAGAAAAGACAAAGGGAGTTCCATAGGCGGTAAAAGAGGTAAAGTCTTACGATCAAGGAAAAGGGTGAGGCATGGGGATGAGGTACAAAGTTCTTCAAATCCTCGTACAATGATCTCTTGGTTGATTGACAACGTGGTACTTTTAGAATCCAAGGTGTTCTGCCGTGGTAGATATAATGTGGTGAAAAAAGGTAAACTATTGCATTGTGGCATAGAATGTGATTGTTGTGGTTTGGTTTTCGGCCCCACTAACTTTGAGGCTCATGCTGGTTGTGCAAAGCACCGTCCATCTACTAGTATCTTCTTGGAAGATAGAAGATCACTGTTGGATTGCCAAAGGGAAGCTTTGAGTAGTTCACAACAAAAAAACCATGATGCTGTTATGCAGAGAGACAATGTTTATAAAGACAATGACAGCATCTGTTCTATATGTCGTTATGGTGGTGAATTGATGCTTTGTGATAGATGCCCATCCTCATTCCATCTCAGTTGTCTAGGTCTTGAGCAAGTTCCTGATGGTGATTGGTTTTGCCCACCATGTTGCTGCAAAATATGCAACAAACCAAAATATGGAGAAGATTGTGCAGATAATGTGGATTGCAGTATGCTCGTTTGTGATCAATGTGAGCACAAATACCACATTGGGTGCCTAAAGACTAGAGGCTTTACCAGTAACTTGGAAAACCAACCTAATAAGAATTGGTTCTGCAATGATGCTTGTGAGAACATATTTTTCAGTCTACAAAAGCTGATAGGGAAACCAATTCCCGTGGGTGCTGATAATCTTACTTGGATATTGTTGAAGACCCCGAAAAGTGATAACCATGGAGATCTTACTTCTGAAGACCTTGAGCGCATGAGTCAAATTGAAAGCAAGCTAAGTGTGGCTCTTGGAGTATTCCATGAGTGTTTTGATCCAGTTATTGATGATCTCACTGGGAGAGATATCATATCAGATATTATGTTCAATAGAGGTTCAGAACTTAATCGTTCCAACTTTCGTGGGTTCTACACAATGATTTTGGAGAGGAATGACCAGGTGATTTCTGCTGCCACCATAAGAATTTATGGTCAGAAGGTTGCTGAGCTACCATTTGTTGCCACCAGGAGGAAGTTTCAAAGACTTGGAATGTGTAGCATCTTGATAAATGAGCTAGAGAAGCAGTTGACTAACTTGGGAATTGAGAGGATGATTTTGCCTTCCTCTCCCAGTGTGATAGACACTTGGACAAACTCATTTGGCTTTGCAAGGATGACAGATTTGGATAAGTCTCAATTTCTTGACTACACTTTTCTAGACTTCCAAGACACCACTATGTGCCACAAATTTTTGATGAAACCTTCAATCAAATGTTTTGATGGGTATGTGACATGCCCCCAATTTGGCTGGCCTAAACCTTGTATCGAGCAATGA 2082 0.4198 MAPSSAPAVSIEPELCPHAVIDWYKLTGSTDYRRGRGKRDLSLKAKQHLCALGWNLWYIDKQGRWELRYTSPINSRNHISLRKACESCIREGGCGPQNVPLILETKGLQVERDHDYQPSTTTAMSSSSAQPQEQPRTCKKPSARAQPRTCKKKERESFDDDDEVDHSQPTSELDQASSTTVISSSAQAHVVPRKSKKQRAEPKKSKKRQRESCDDGDDAEWNPRKDKGSSIGGKRGKVLRSRKRVRHGDEVQSSSNPRTMISWLIDNVVLLESKVFCRGRYNVVKKGKLLHCGIECDCCGLVFGPTNFEAHAGCAKHRPSTSIFLEDRRSLLDCQREALSSSQQKNHDAVMQRDNVYKDNDSICSICRYGGELMLCDRCPSSFHLSCLGLEQVPDGDWFCPPCCCKICNKPKYGEDCADNVDCSMLVCDQCEHKYHIGCLKTRGFTSNLENQPNKNWFCNDACENIFFSLQKLIGKPIPVGADNLTWILLKTPKSDNHGDLTSEDLERMSQIESKLSVALGVFHECFDPVIDDLTGRDIISDIMFNRGSELNRSNFRGFYTMILERNDQVISAATIRIYGQKVAELPFVATRRKFQRLGMCSILINELEKQLTNLGIERMILPSSPSVIDTWTNSFGFARMTDLDKSQFLDYTFLDFQDTTMCHKFLMKPSIKCFDGYVTCPQFGWPKPCIEQ 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3215g00039 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 466 IPR013083 -
Gabi3215g00039 693 ProSiteProfiles Zinc finger PHD-type profile. 361 406 IPR019787 -
Gabi3215g00039 693 CDD NAT_SF 563 622 - -
Gabi3215g00039 693 MobiDBLite consensus disorder prediction 147 164 - -
Gabi3215g00039 693 MobiDBLite consensus disorder prediction 115 255 - -
Gabi3215g00039 693 Pfam PHD-finger 363 405 IPR019787 -
Gabi3215g00039 693 Pfam Acetyltransferase (GNAT) family 560 638 IPR000182 GO:0016747
Gabi3215g00039 693 MobiDBLite consensus disorder prediction 170 191 - -
Gabi3215g00039 693 Pfam Tify domain binding domain 287 338 IPR032308 -
Gabi3215g00039 693 MobiDBLite consensus disorder prediction 205 233 - -
Gabi3215g00039 693 MobiDBLite consensus disorder prediction 115 139 - -
Gabi3215g00039 693 PANTHER PHD FINGER PROTEIN 12 17 670 IPR042163 GO:0003714|GO:0045892
Gabi3215g00039 693 SMART PHD_3 363 404 IPR001965 -
Gabi3215g00039 693 SMART PHD_3 405 463 IPR001965 -
Gabi3215g00039 693 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 557 632 IPR016181 -
Gabi3215g00039 693 SUPERFAMILY FYVE/PHD zinc finger 354 411 IPR011011 -
Gabi3215g00039 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 405 IPR013083 -
Gabi3215g00039 693 Gene3D - 503 673 - -
Gabi3215g00039 693 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 504 673 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3215g00039 Gabi-Chr3215 430780 432861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3215g00039 41 615 PHD Transcription Factor Family AT5G58610 35.526 3.75e-100 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3215g00039 Acetyltransf_1 3.1e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3215g00039 - - qsa:O6P43_015988 585.489