Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3215g00037 ATGTTGTGCGCTTGCTCCTCCGGGGAGCAATTCAAATTTGAAGAGCCGCCACCGCAGTCGCCGGAGTCTCTCGCAACAAGGGATTTCTCTGCCAGTGGACTTTCTTCGAGGAATGCGGATTGGGAATCGAAGTTTGATGAAACCCAAGTAGAAGAAGTTGAATCTACTCTAAAAGAAGCACTTTCCTTAAACTATGAGGAAGCAAGGGCCCTGCTGGGGAGGCTTGAATACCAAAGAGGGAATTTTGATGCTGCCCTCCAAGTATTTCAAGGTATAGACATCAAGGGTTTGACCCCAAGGATGATCAGGGCAATTGCTGAAAGAACCAAGCAAAGAAAACCACGTTCCAAGGCAGATATCGTGATTCCAAATGTGATGTCATTGCATTCAGTAAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCAAGATCATTAGAGGAGCTTGGGCGATACATTGAGGCTGCAAAGGAGTGCAGAATAATTCTGGATACGGTTGAATCTGCCTTTCCTAATGGAATGCCCGAGAGTATTGGTGAAGATTGTAAGTTGCAAGAAATGTTCCATAGAGCATTGCAGTTGCTTCCGAGCCTATGGATCAAGGCAGGCTTTCTAGATGAAGCTGTCACTGCATATCGTCTTGCTCTGGTCAAGCCATGGAATTTGGAACAACGAAGGTTGGCTGGTGTACAAAAAGATTTAGCTACAATGCTACTCTATGGTGGTGTTGAAGTAAGCCTACCCTCTCAGTTGCAAGTGTGGGGTCAAACAACACCCATGAGTAACGTTGAGGAAGCAATACTTTTGCTATTAATACTCATGAGCAAAGTAGCAATTCAGAAAATAGAGTGGGATGCTGAAATAATGGATCATCTTACATTTGCACTTTCAGTTACTGGGTTGTTTGAGCCATTGGCAGATCATGTAGAGCAGATCCTTCCAGGTATCTATAGTCGAGTTGAGAGGTGGTACTTTCTTGCTCTATGTTATAGTGCAGCAGGGCATAATGAAGCAGCATTGAACCTTTTGAGGAAGGCTTGTGGTAGTTCTGAAGCAAAGCATAGACTCCATTTTCCTTCATTTTTGTTTGGAGCTAAACTTTGTTCCCAACATCCTGGCCATGCTCGTGAAGGCATTAACTTTTCACATGAAGTTATCAATCTAGCTAAGTACCAAAATGAGCATTTTTTGAGTCAAGGATACAAGTTTCTTGGCGTTTGCTATGGGGCTGCAGCTAGAACTTCTGTACTTGATTCTGAAAGAAGTATGTTTCAAAGAGAGTCTTTGAACTTTCTAAACTGTGCTGCTGTATATGGAAATGGTGACCCGGATGTGATATTCAGCCTTGGACTGGAGAAAGCAATTCAAAGGAATCTGGATGGAGCTTATGACAATATAATGATGTACTCAGACGCGACTGTTGGTAGTTCAGGAAGAGGTTGGCAGTTGTTAGCACTCATAGTATCCGCACAGCAGCGGTTCAAGGATGCTGAAACTATAATTGATTTTGCTTTAGATGAGGCTGGAAGGATGGATCAGCTAGAACTTCTAAGATTGAAAGCAGTACTTCAAATTGCTCAGCAGGAACCCAAGCAAGCAATAGAGACCTACAGAATCTTGCTAGCACTAATTCAAGCAAGAAAAGAGCTTTGGCTTCAAGATAAGAACTTTGATCAAGCAAAAGCATTCAGGCATGAGGGATTAACCGAAAGGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTAGCATTTATGCAGATGTTGGTTCCTTGCTTGATGCAAAAGCTTGTGTTAACAAAGCCCAGTTGATAGATTTTTTCTCTCCAAGAAGCTGGCATATTACAGGGTTGTTGTTTGAAGCTCAATCATTATACAAACAGGCATTTGTTTCCTTTTCAGTATCATTGTCGATAGAACCAGATTACGTTCCCAGTATCATTTCAACTGCAGAATTGTTGCTGAAACTTGGTTTGCAATCACTTCCAATTGCAAGAAGCTTTTTAATGAATGCTTTGCGATTAGAACCCACAAACCACAATGCTTGGTTCAACCTCGGATTGATTTCGAAAACAGAAGGTTCATTACAGCAAGCAGCTGATTTCTTTCAAGCTGCATACGAACTGAAGCTTTCGGCTCCAGTGCAAAAATTTGAGTAA 2154 0.4229 MLCACSSGEQFKFEEPPPQSPESLATRDFSASGLSSRNADWESKFDETQVEEVESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKGLTPRMIRAIAERTKQRKPRSKADIVIPNVMSLHSVSLLLEAILLKARSLEELGRYIEAAKECRIILDTVESAFPNGMPESIGEDCKLQEMFHRALQLLPSLWIKAGFLDEAVTAYRLALVKPWNLEQRRLAGVQKDLATMLLYGGVEVSLPSQLQVWGQTTPMSNVEEAILLLLILMSKVAIQKIEWDAEIMDHLTFALSVTGLFEPLADHVEQILPGIYSRVERWYFLALCYSAAGHNEAALNLLRKACGSSEAKHRLHFPSFLFGAKLCSQHPGHAREGINFSHEVINLAKYQNEHFLSQGYKFLGVCYGAAARTSVLDSERSMFQRESLNFLNCAAVYGNGDPDVIFSLGLEKAIQRNLDGAYDNIMMYSDATVGSSGRGWQLLALIVSAQQRFKDAETIIDFALDEAGRMDQLELLRLKAVLQIAQQEPKQAIETYRILLALIQARKELWLQDKNFDQAKAFRHEGLTERKLEMEAWQDLASIYADVGSLLDAKACVNKAQLIDFFSPRSWHITGLLFEAQSLYKQAFVSFSVSLSIEPDYVPSIISTAELLLKLGLQSLPIARSFLMNALRLEPTNHNAWFNLGLISKTEGSLQQAADFFQAAYELKLSAPVQKFE 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3215g00037 717 SMART tpr_5 477 510 IPR019734 GO:0005515
Gabi3215g00037 717 SMART tpr_5 678 711 IPR019734 GO:0005515
Gabi3215g00037 717 SMART tpr_5 574 607 IPR019734 GO:0005515
Gabi3215g00037 717 SMART tpr_5 135 168 IPR019734 GO:0005515
Gabi3215g00037 717 SMART tpr_5 319 352 IPR019734 GO:0005515
Gabi3215g00037 717 SMART tpr_5 513 546 IPR019734 GO:0005515
Gabi3215g00037 717 SMART tpr_5 608 641 IPR019734 GO:0005515
Gabi3215g00037 717 Gene3D Tetratricopeptide repeat domain 543 710 IPR011990 GO:0005515
Gabi3215g00037 717 MobiDBLite consensus disorder prediction 23 39 - -
Gabi3215g00037 717 Pfam Tetratricopeptide repeat 320 349 IPR019734 GO:0005515
Gabi3215g00037 717 Pfam Tetratricopeptide repeat 679 708 IPR019734 GO:0005515
Gabi3215g00037 717 ProSiteProfiles TPR repeat profile. 678 711 IPR019734 GO:0005515
Gabi3215g00037 717 SUPERFAMILY TPR-like 483 708 IPR011990 GO:0005515
Gabi3215g00037 717 PANTHER PROTEIN NPG1 1 717 IPR043376 -
Gabi3215g00037 717 Coils Coil 58 78 - -
Gabi3215g00037 717 Gene3D Tetratricopeptide repeat domain 260 542 IPR011990 GO:0005515
Gabi3215g00037 717 Gene3D Tetratricopeptide repeat domain 42 241 IPR011990 GO:0005515
Gabi3215g00037 717 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3215g00037 Gabi-Chr3215 418474 421536 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3215g00037 1 716 Calmodulin-binding Proteins AT1G27460 59.444 0.0 848