Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3215g00035 ATGTTGTGCGCTTGCTCCTCCGGGGAGCAATTCAAATTTGAAGAGCCGCCACCGCAGTCGCCGGAGTCTCTCGCAACAAGGGATTTCTCTGCCAGTGGACTTTCTTCGAGGAATGCGGATTGGGAATCGAAGTTTGATGAAACCCAAGTAGAAGAAGTTGAATCTACTCTAAAAGAAGCACTTTCCTTAAACTATGAGGAAGCAAGGGCCCTGCTGGGGAGGCTTGAATACCAAAGAGGGAATTTTGATGCTGCCCTCCAAGTATTTCAAGGTATAGACATCAAGGGTTTGACCCCAAGGATGATCAGGGCAATTGCTGAAAGAACCAAGCAAAGAAAACCACGTTCCAAGGCAGATATCGTGATTCCAAATGTGATGTCATTGCATTCAGTAAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCAAGATCATTAGAGGAGCTTGGGCGATACATTGAGGCTGCAAAGGAGTGCAGAATAATTCTGGATACGGTTGAATCTGCCTTTCCTAATGGAATGCCCGAGAGTATTGGTGAAGATTGTAAGTTGCAAGAAATGTTCCATAGAGCATTGCAGTTGCTTCCGAGCCTATGGATCAAGGCAGGCTTTCTAGATGAAGCTGTCACTGCATATCGTCTTGCTCTGGTCAAGCCATGGAATTTGGAACAACGAAGGTTGGCTGGTGTACAAAAAGATTTAGCTACAATGCTACTCTATGGTGGTGTTGAAGTAAGCCTACCCTCTCAGTTGCAAGTGTGGGGTCAAACAACACCCATGAGTAACGTTGAGGAAGCAATACTTTTGCTATTAATACTCATGAGCAAAGTAGCAATTCAGAAAATAGAGTGGGATGCTGAAATAATGGATCATCTTACATTTGCACTTTCAGTTACTGGGTTGTTTGAGCCATTGGCAGATCATGTAGAGCAGATCCTTCCAGGTATCTATAGTCGAGTTGAGAGGTGGTACTTTCTTGCTCTATGTTATAGTGCAGCAGGGCATAATGAAGCAGCATTGAACCTTTTGAGGAAGGCTTGTGGTAGTTCTGAAGCAAAGCATAGACTCCATTTTCCTTCATTTTTGTTTGGAGCTAAACTTTGTTCCCAACATCCTGGCCATGCTCGTGAAGGCATTAACTTTTCACATGAAGTTATCAATCTAGCTAAGTACCAAAATGAGCATTTTTTGAGTCAAGGATACAAGTTTCTTGGCGTTTGCTATGGGGCTGCAGCTAGAACTTCTGTACTTGATTCTGAAAGAAGTATGTTTCAAAGAGAGTCTTTGAACTTTCTAAACTGTGCTGCTGTATATGGAAATGGTGACCCGGATGTGATATTCAGCCTTGGACTGGAGAAAGCAATTCAAAGGAATCTGGATGGAGCTTATGACAATATAATGATGTACTCAGACGCGACTGTTGGTAGTTCAGGAAGAGGTTGGCAGTTGTTAGCACTCATAGTATCCGCACAGCAGCGGTTCAAGGATGCTGAAACTATAATTGATTTTGCTTTAGATGAGGCTGGAAGGATGGATCAGCTAGAACTTCTAAGATTGAAAGCAGTACTTCAAATTGCTCAGCAGGAACCCAAGCAAGCAATAGAGACCTACAGAATCTTGCTAGCACTAATTCAAGCAAGAAAAGAGCTTTGGCTTCAAGATAAGAACTTTGATCAAGCAAAATTGGAAATGGAAGCCTGGCAGGATTTGGCTAGCATTTATGCAGATGTTGGTTCCTTGCTTGATGCAAAAGCTTGTGTTAACAAAGCCCAGTTGATAGATTTTTTCTCTCCAAGAAGCTGGCATATTACAGGGTTGTTGTTTGAAGCTCAATCATTATACAAACAGGCATTTGTTTCCTTTTCAGTATCATTGTCGATAGAACCAGATTACGTTCCCAGTATCATTTCAACTGCAGAATTGTTGCTGAAACTTGGTTTGCAATCACTTCCAATTGCAAGAAGCTTTTTAATGAATGCTTTGCGATTAGAACCCACAAACCACAATGCTTGGTTCAACCTCGGATTGATTTCGAAAACAGAAGGTTCATTACAGCAAGCAGCTGATTTCTTTCAAGCTGCATACGAACTGAAGCTTTCGGCTCCAGTGCAAAAATTTGAGTAA 2121 0.422 MLCACSSGEQFKFEEPPPQSPESLATRDFSASGLSSRNADWESKFDETQVEEVESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKGLTPRMIRAIAERTKQRKPRSKADIVIPNVMSLHSVSLLLEAILLKARSLEELGRYIEAAKECRIILDTVESAFPNGMPESIGEDCKLQEMFHRALQLLPSLWIKAGFLDEAVTAYRLALVKPWNLEQRRLAGVQKDLATMLLYGGVEVSLPSQLQVWGQTTPMSNVEEAILLLLILMSKVAIQKIEWDAEIMDHLTFALSVTGLFEPLADHVEQILPGIYSRVERWYFLALCYSAAGHNEAALNLLRKACGSSEAKHRLHFPSFLFGAKLCSQHPGHAREGINFSHEVINLAKYQNEHFLSQGYKFLGVCYGAAARTSVLDSERSMFQRESLNFLNCAAVYGNGDPDVIFSLGLEKAIQRNLDGAYDNIMMYSDATVGSSGRGWQLLALIVSAQQRFKDAETIIDFALDEAGRMDQLELLRLKAVLQIAQQEPKQAIETYRILLALIQARKELWLQDKNFDQAKLEMEAWQDLASIYADVGSLLDAKACVNKAQLIDFFSPRSWHITGLLFEAQSLYKQAFVSFSVSLSIEPDYVPSIISTAELLLKLGLQSLPIARSFLMNALRLEPTNHNAWFNLGLISKTEGSLQQAADFFQAAYELKLSAPVQKFE 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3215g00035 706 SUPERFAMILY TPR-like 68 542 IPR011990 GO:0005515
Gabi3215g00035 706 MobiDBLite consensus disorder prediction 23 39 - -
Gabi3215g00035 706 Gene3D Tetratricopeptide repeat domain 439 702 IPR011990 GO:0005515
Gabi3215g00035 706 Gene3D Tetratricopeptide repeat domain 42 346 IPR011990 GO:0005515
Gabi3215g00035 706 SMART tpr_5 477 510 IPR019734 GO:0005515
Gabi3215g00035 706 SMART tpr_5 667 700 IPR019734 GO:0005515
Gabi3215g00035 706 SMART tpr_5 563 596 IPR019734 GO:0005515
Gabi3215g00035 706 SMART tpr_5 135 168 IPR019734 GO:0005515
Gabi3215g00035 706 SMART tpr_5 319 352 IPR019734 GO:0005515
Gabi3215g00035 706 SMART tpr_5 513 546 IPR019734 GO:0005515
Gabi3215g00035 706 SMART tpr_5 597 630 IPR019734 GO:0005515
Gabi3215g00035 706 Pfam Tetratricopeptide repeat 668 697 IPR019734 GO:0005515
Gabi3215g00035 706 Pfam Tetratricopeptide repeat 320 349 IPR019734 GO:0005515
Gabi3215g00035 706 ProSiteProfiles TPR repeat profile. 667 700 IPR019734 GO:0005515
Gabi3215g00035 706 SUPERFAMILY TPR-like 511 697 IPR011990 GO:0005515
Gabi3215g00035 706 Coils Coil 58 78 - -
Gabi3215g00035 706 PANTHER PROTEIN NPG1 1 706 IPR043376 -
Gabi3215g00035 706 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3215g00035 Gabi-Chr3215 418474 421536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3215g00035 1 705 Calmodulin-binding Proteins AT1G27460 60.226 0.0 854
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3215g00035 K21843 - gmx:100780807 1174.07