Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3215g00025 ATGGCAAGGCTTATCTCGCATTATGGTGGTAATTCTAGAAGCTTGTTTGAGATTATTATACTATTTCTTGCGCTAGTGTTACAGATTTGCTCCCAGCATGCAACATCTCATTCCATAGTGCAGTTCCTTCCTGGGTTCCAGGGACCACTTCCTTTTGTACTTGAAACTGGGTACGTGGGAGTGGGTGAAACTGAAACGGAGCAGCAAGCGGAACTTTTCTACTATTTTATTGAGTCAGAGAATGATCCTAAAGAGGATCCTCTTGTGCTTTGGCTAACGGGAGGTCCCGGTTGCTCTGGTCTTTCTGGTCTTGTCTTTGAAATAGGTCCACTGACATTTAAAAACGAGGAATACAATGGAAGCTTACCTAATTTGGAATTGAAGCCACAGTCATGGACTAAGGCAAGTAGCATTATCTTTTTGGATTTACCTGCCGGTACTGGATTCTCTTATCCCAAAACAGAACGTGCTGTTCAGCAAAGTGACTGGAAGCTAGTTCACCATGCTCATCAATTTCTTAGGAAGTGGCTGATTGATCATCCGAAATTTCTCTCAAATGAAGTGTATATTGCTGGCGACTCATACTCAGGCCGTCCTGTCCCAGTAATTGTTCAAGAAATTTCATATGGAAATGAAGGTGGAGTGCAGCCGTGGATAAATCTCCAGGGATACTTGCTGGGGAATCCCTTAACAATACCAACTGAAGGTGACTACGCAATACCATTTTGTCATGGCATGGGACTAATATCTGATGAACTCTACGAGTCACTGCGAAAGAATTGTAGAGGAGAGTATCACAATCCAGACCCCAGAAACTTTGTTTGTCTAAGAGACATCGAATCCTACCAGGAGTCTATTTCAGGACTTGAGACGGGCAATATTTTGGAACCCAAATGCGAATTTGGTTTGCGTAATCCAATAGAAGTCCATAGGAGGATGTCTCTTGCAAAGCCGTCGACGTTTTTGAGTTCTCGTCTCTCGCTGCCACCCTTAGGATGCCTGTCTCATGGTTATTTCCTCTGTACCTACTGGGCCAACGATGATAATGTTCGCAATGCGCTGCATATTCGAAAGGGAAGTATAGGGAAATGGAAACGCTGTAACAATGACATACCTTTTGAGTACGACATCCTTAGCAGCTTCCAGTATCATGTAAATCTCAGCAGAAAAGGGTACCGTTCATTAATATACAGTGGGGATCATGACATGATAGTTCCATTCTTGGCGACTCAAGCGTGGATAAGATCTTTAAACTACACCATTGTGGATGACTGGAGGCAATGGTATTCAAATGGCCAAGTTGCAGGATACACGAGGACTTACTCAAATCGGATGACATTTGCTACTGTGAAGGGTGGAAGGCATACAGCTCCCGAGAACAGACCTGAAGAATGTTTAGCCATGTTCAGTAGATGGATATCTAATATGCCACTGTAG 1437 0.4349 MARLISHYGGNSRSLFEIIILFLALVLQICSQHATSHSIVQFLPGFQGPLPFVLETGYVGVGETETEQQAELFYYFIESENDPKEDPLVLWLTGGPGCSGLSGLVFEIGPLTFKNEEYNGSLPNLELKPQSWTKASSIIFLDLPAGTGFSYPKTERAVQQSDWKLVHHAHQFLRKWLIDHPKFLSNEVYIAGDSYSGRPVPVIVQEISYGNEGGVQPWINLQGYLLGNPLTIPTEGDYAIPFCHGMGLISDELYESLRKNCRGEYHNPDPRNFVCLRDIESYQESISGLETGNILEPKCEFGLRNPIEVHRRMSLAKPSTFLSSRLSLPPLGCLSHGYFLCTYWANDDNVRNALHIRKGSIGKWKRCNNDIPFEYDILSSFQYHVNLSRKGYRSLIYSGDHDMIVPFLATQAWIRSLNYTIVDDWRQWYSNGQVAGYTRTYSNRMTFATVKGGRHTAPENRPEECLAMFSRWISNMPL 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3215g00025 478 Gene3D alpha/beta hydrolase 32 305 IPR029058 -
Gabi3215g00025 478 Gene3D - 333 478 - -
Gabi3215g00025 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 141 151 IPR001563 GO:0004185|GO:0006508
Gabi3215g00025 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 140 IPR001563 GO:0004185|GO:0006508
Gabi3215g00025 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 445 458 IPR001563 GO:0004185|GO:0006508
Gabi3215g00025 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 176 201 IPR001563 GO:0004185|GO:0006508
Gabi3215g00025 478 FunFam Serine carboxypeptidase-like 11 34 478 - -
Gabi3215g00025 478 SUPERFAMILY alpha/beta-Hydrolases 40 477 IPR029058 -
Gabi3215g00025 478 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 38 462 IPR001563 GO:0004185|GO:0006508
Gabi3215g00025 478 FunFam Carboxypeptidase 332 477 - -
Gabi3215g00025 478 Pfam Serine carboxypeptidase 44 475 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3215g00025 Gabi-Chr3215 274150 279609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3215g00025 32 63 Calmodulin-binding Proteins AT2G22960 68.750 1.39e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3215g00025 K16296 - gmx:100792006 671.774