Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3215g00022 ATGAAGAGGATTGGTGGTGCTGACCCATTTTCAGCAGGTTCTGAGTCTGTGGTTCTAACTGGTGGTGTTGTTCAAGGAGAAGTGCTAAATGATGCTATGATTTTTGTGGATGGTGTTGTTATTCATGCAACTGGTATAGGAGCTTGTGGAGGGGTGGTGTGCTCCTCGAATGGTACCTGGATGAGTGGGTTCTCCCAACACATAGGCCCTTGCTCACCTCTGGAAGCTGAGCTCAGGGGGATTTTTCATGGCCTTAAACTTGCTGAAAGGCTAGCAATAGACAAGGTATGGATTGGTTGTGACAGTAAGGAAGCTATCTTATGTCTTGAGGCTGAACCTGTAACTTGTGGACTATCTAGTTTAATTGGTATGATCAAGAATGCTACTGCGGGTTTTGATCAGGTACATGTTGATTTTGTTCCTAGAGAGCAGAATGAGGTTGCTGATATTTTAGCTAAATTTGGTTTAAGCTGCAAGGGTGAAGAGACGAGGCTGATTCCCTCTCCCCCTGCTAGCATAGGACCCATTGGAAATCATTTTTGGTATGCAACAATGCCTCTGTACCAGCCACCTAAAAAAGGGAGAAGACAAGGGGATGAGAAGGTTAACGTGCTGAATCTAGAAGCCACCATGAAAGGTGGTGTTGTGGACGGTGGCATCCCTGACAAATTGGATCTGAAGATGTTGATTGAGGAGCTTGAGGCAATTGATGTGCCTTCGGTTTTTATCTGTCCAATCTCTCTTGAGCCTATGCGAGACCCTGTGACCCTTTGCACGGGTCAAACCTATGACAGGTGCAATGTTCTCAAATGGTTCTCCCTCGGTCACAATACTTGTCCCACAACAATGCAAGAGCTTTGGGATGATTCTGTCACGCCCAACAGGACTCTCAACCACTTCATCCTTAGCTGGTTATCTCAAAAGTACTTGTCAATGAAGAAGCAGTTCGAGGATGTGCAAGGAACAGCCCTGGAGCTCTTGGACACGCTCAAGAAGGTAAAGGGTCAAGCTAGAATTCGAGCTCTTAAGGAACTTCGTCAGATTGTTGATTCCCATGCGTACACGAGGAAGAACGTTGTAGAAAATGGTGGGCTTGCTTTGATTTCTTCTTTGTTGGGTCCTTTCACTTCCCACGCCGTTGGGTCCGAGGCTATTGGGATCCTTGTTAATTTGGATTTGAGTTCGGAGTTGAAGAAAAATCTGATGCATCCCGCGAAGGTATCGTTGTTGGTGGATATTATGAATGAGGGAACCATTGAGACAAAGATGAATTGTGCCAAATTGATTGAAATGTTATTGATGGAAGGGAATGGCTCGGAGGCAGAACTTGCCTCAAGCTTGAGTCTTTTGTTTGGGTTACTGAGGTTAGTGAGGGATAAGAAGCACCCAACTGGGGTTTCAACTGGACTCGTATTACTCAAGATTATATGTTCTCAGGAATCAGTTAGAAGCTCCGTTGTAAGCATAGGAGCAGTGCCCCAGTTGATTGAGCTTTTGCCCACTTTGAATAATGAGTGCTTAGAAATAGCATTATATATTCTTGAGGTGTTGTCAACCCTTCAAGAGGGAAGAGTGGCTTTGAAAGAATGTCCAAACATTATACCCAATGTGGTTAAGTTATTGATGAGGGTCTCAGAGAACTGTACCCAATTCGCGTTGTCAATATTGTGGGCTATCTACAAGCTTGCCCCAGAAGAATGTGCCTCAAAGGCTGTGGAGGCAGGGTTGGCGGTAAAGCTACTTTTAGTGATTCAGAGTGGTTGCAACCCGGTGTTGAAGCAGATGTCTGCTGAGTTTTTGAAAATGTGCAGTTTGGATTACTCTACTAGTGTCTTGATTTCCCAGTGTATGCTTACTACAACAATACAATGA 1872 0.4471 MKRIGGADPFSAGSESVVLTGGVVQGEVLNDAMIFVDGVVIHATGIGACGGVVCSSNGTWMSGFSQHIGPCSPLEAELRGIFHGLKLAERLAIDKVWIGCDSKEAILCLEAEPVTCGLSSLIGMIKNATAGFDQVHVDFVPREQNEVADILAKFGLSCKGEETRLIPSPPASIGPIGNHFWYATMPLYQPPKKGRRQGDEKVNVLNLEATMKGGVVDGGIPDKLDLKMLIEELEAIDVPSVFICPISLEPMRDPVTLCTGQTYDRCNVLKWFSLGHNTCPTTMQELWDDSVTPNRTLNHFILSWLSQKYLSMKKQFEDVQGTALELLDTLKKVKGQARIRALKELRQIVDSHAYTRKNVVENGGLALISSLLGPFTSHAVGSEAIGILVNLDLSSELKKNLMHPAKVSLLVDIMNEGTIETKMNCAKLIEMLLMEGNGSEAELASSLSLLFGLLRLVRDKKHPTGVSTGLVLLKIICSQESVRSSVVSIGAVPQLIELLPTLNNECLEIALYILEVLSTLQEGRVALKECPNIIPNVVKLLMRVSENCTQFALSILWAIYKLAPEECASKAVEAGLAVKLLLVIQSGCNPVLKQMSAEFLKMCSLDYSTSVLISQCMLTTTIQ 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3215g00022 623 CDD RING-Ubox_PUB 239 291 IPR045210 -
Gabi3215g00022 623 CDD RNase_H_like 34 153 IPR044730 -
Gabi3215g00022 623 ProSiteProfiles U-box domain profile. 237 311 IPR003613 GO:0004842|GO:0016567
Gabi3215g00022 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 318 IPR013083 -
Gabi3215g00022 623 Pfam U-box domain 238 308 IPR003613 GO:0004842|GO:0016567
Gabi3215g00022 623 Pfam Reverse transcriptase-like 36 154 IPR002156 GO:0003676|GO:0004523
Gabi3215g00022 623 SUPERFAMILY ARM repeat 299 603 IPR016024 -
Gabi3215g00022 623 PANTHER WDSAM1 PROTEIN 233 610 IPR045185 GO:0061630
Gabi3215g00022 623 Gene3D - 32 157 IPR036397 GO:0003676
Gabi3215g00022 623 SUPERFAMILY Ribonuclease H-like 32 157 IPR012337 -
Gabi3215g00022 623 Gene3D - 319 602 IPR011989 -
Gabi3215g00022 623 SUPERFAMILY RING/U-box 232 308 - -
Gabi3215g00022 623 SMART Ubox_2 241 304 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3215g00022 Gabi-Chr3215 240320 245931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3215g00022 185 623 U-box Gene Family AT3G49810 62.138 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3215g00022 - - gmx:100785092 659.833