Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3215g00012 ATGGATCTTGGGGCGGTGGGTTTGGATAGGTTGGTAGGTTCAGACACTGGATTTGTTTCTCTTGCTACAGATCCTGAAACAAAGCACAAGTGGTACGGATATGGGTTCCTTAAGCAGGAAAGATCTGGCACCACTGAAGATGACTGGAGGAGCTCCAAACTGGCTAAGACTGATGATATCTCTGCCTCCAAAGCAATGTTGTTTCATCACAGAAACTCTTTACTGAGATCTAATGGTATTCTCTTTTCTGATGGTCAGCCCCAACAGCAAATGCTGAGCTTCTCTTCTCCAAAATCAGAACCTTTGTTTGTTGACAAGACCTCCCCGAATGCCACATTTCCATATTCTTTCCACCCATTATCTAGTTACAACAAGAATACAGGTTACAGTTCTGGAAGCATGCATGGGGTTTTAGCGGGGACAAGAGAGCCATTCACTCCATCCCAGTGGATGGAGCTAGAACAGCAGGCCCTGATCTACAAGTACTTAACATCAAATGTTCCTGTACCATCTCATCTTCTCATCCCCATCAAGAAAGCGCTTGAATCTGCCGGATTCTGTAACTTTTCAAACGGTCTTTTGAGACCCAATGCCATGGGATGGGGAGGTTTCCATCTGGGGTTCTCGAACAACACCGATCCTGAGCCAGGAAGGTGTAGGAGAACAGATGGGAAGAAATGGCGGTGCTCGAGAGATGCCGTTGTGGATCAGAAGTATTGCGAGCGGCACATGAACAGAGGACGTCATCGTTCAAGAAAGCCTGTGGAAACTCCTACAAATGCCACCACCACCGCTTCAAACCTCATCATGACTAGTAACAATGCTTCCTCCCTAGTGGTGCCCGGATGCACTGCATCCAACAGCCTCACCTTTTCACAACAGGAACCCAAGAATATTCACCCTCTTGCATCTGATACTTCTGCGCCTAACAACATCAACAGGATGTTTATGAATAACAAGGATAATGGGAGCGAGAGAATCGCAGACACTGATGCCCTTCCAATGCTCCCCCCAAAGGAAAACCCTTTTATAATTCATAAACAGCAAATTCGATATGAAGAATCCTCAAGGAATGAGTTTGGGCTTGTCCCTTCTGATTCTCTACTTAACCCTTCGCAGAAAAGTTCCACCTTGCTAAGCAGCAGAAGCTTCGGTTCTACACAAAACCAAACTAACGAAGAAACTGGTTCGCAACATTCCCTTAGGCATTTCATTGATGACTGGCCCAAAACTCAGTCTAATGATCGCTCAGGTGTTTCGTGGCCTGAGCTTGACATACAATCAGAGAGGACCGAATTATCAATTTCAATCCCAATGATTTCCACAGACTTCATGTCAGCTACTTCCTCTCCCACCAATGATCAAGTCACATTGTCGCCTCTTCGGCTATCAAGGGAGTTAGACCCAATTCAAATGGGTTTGGGTGTTGGAAATGCTATCAACGAGTCAAACAGTAGACAGGCTAATTGGATTCCAATTTCTTGGGGGAGTTCTATGGGTGGTCCTCTTGGAGAGGTTCTGAATCTTAGCAATAACAATGCAAGTGATCATTGTGTCAAGAACTCCTCTGCTCTCAACCTCATGACTGATGGATGGGACAATAGCCTTTCATTAGGGTCTTCTCCCACTGGGGTTTTGCAAAAGACAGCATTTGTATCAGTATCTCTATCCAATAGCAGTGCTGGGAGTAGTCCAAGGGCAGAGAATAAGACTCAAGAATGA 1722 0.4553 MDLGAVGLDRLVGSDTGFVSLATDPETKHKWYGYGFLKQERSGTTEDDWRSSKLAKTDDISASKAMLFHHRNSLLRSNGILFSDGQPQQQMLSFSSPKSEPLFVDKTSPNATFPYSFHPLSSYNKNTGYSSGSMHGVLAGTREPFTPSQWMELEQQALIYKYLTSNVPVPSHLLIPIKKALESAGFCNFSNGLLRPNAMGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVETPTNATTTASNLIMTSNNASSLVVPGCTASNSLTFSQQEPKNIHPLASDTSAPNNINRMFMNNKDNGSERIADTDALPMLPPKENPFIIHKQQIRYEESSRNEFGLVPSDSLLNPSQKSSTLLSSRSFGSTQNQTNEETGSQHSLRHFIDDWPKTQSNDRSGVSWPELDIQSERTELSISIPMISTDFMSATSSPTNDQVTLSPLRLSRELDPIQMGLGVGNAINESNSRQANWIPISWGSSMGGPLGEVLNLSNNNASDHCVKNSSALNLMTDGWDNSLSLGSSPTGVLQKTAFVSVSLSNSSAGSSPRAENKTQE 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3215g00012 573 MobiDBLite consensus disorder prediction 363 398 - -
Gabi3215g00012 573 Pfam QLQ 144 177 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi3215g00012 573 MobiDBLite consensus disorder prediction 363 400 - -
Gabi3215g00012 573 PANTHER GROWTH-REGULATING FACTOR 5 88 443 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gabi3215g00012 573 ProSiteProfiles WRC domain profile. 213 257 IPR014977 -
Gabi3215g00012 573 Pfam WRC 214 256 IPR014977 -
Gabi3215g00012 573 ProSiteProfiles QLQ domain profile. 144 179 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gabi3215g00012 573 SMART QLQ_2 143 179 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3215g00012 Gabi-Chr3215 140747 144538 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3215g00012 1 551 GRF Transcription Factor Family AT2G22840 42.382 8.86e-101 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gabi3215g00012 WRC 5.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3215g00012 - - aprc:113865097 864.759