Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3215g00011 ATGAATTTGAAGATGGATTCTGATAGAGCGAAGCTGTTTGTAGGGGGAATTTCTCGGGACACCAACGAAGATATTCTCAAGCACCACTTCGCCAAGTACGGCACCGTTTCGGGTTCCACCATTTCCATAGACCGCAGCACCCGAAGCCCTAGAGGTTTTGGCTTCGTCACGTTCTCTGATCTCTCTGCGGCTGATAAAGCCCTTCAAGACTCCCATGTTATACTTGGAAGAACGGTAGAAGTGAAAAAAGCAATACCCAGAAATGAACAGCAACACCAAAACCAATTACATAATAGAGGGGGAAGTAATTATATTAGTAATGACTGTAGCAGTGACAACATTAGGACTAAAAAGATTTTTGTAGGTGGTTTACCTGCTGGTATATCTGAGGAGGAGTTTAGGAAATACTTTGAGAGGTTCGGTCGTATAACTGATGTAGTGGTGATGCAGGATAGTGTAACTCACAGGCCGAGGGGGTTTGGGTTCATCACATTCGATTCAGAAGAATCCGTTCAAAGCGTTATGGTGAAAAGCTTTCATGACTTGAATGGTAGACAAGTGGAGGTCAAGAGGGCTGTTCCAAAAGACGGAAACCATGTTTATGAGGGTTTTAATAAATTAAGATATAAGAGTGAAAGAGGAGTCTCTAAAAGTTTTCCTCATTATAGTCCTAGGAACATGCTCCCTGGCTTTGCTCCAATGCCTTGGTATGGCAGTGATGGGGTATATGCGTACGGAACAAACACCTATGGTTGCTGGTACCCGATGGGTGGGTATGGGGGGAATGGATATGCAGTTCCATCTGATGCTTCTAGGAACTTCTGGTATGGGCCCATGATAACTGGTCCTCAGACATGTCAGGTGCCTTATGCCAATGCTTCACCAAGTTTTGGATATGTGGGTGGTAGGGTTGGAATGGTAGGTAATGGTGCTGGAACCTGGGGGTACAATGGCATTCTTGGGTCTGCAACAAATTTGAAATTTGATCAACCTTTTAATGCCAATGGATTTGTTCCAGGCAATGTGAGATCACCTCAAGGTGTAAAGCAGGATGTTGACTCTTCGAGTTTTAAAGGAAGCAATGGTGAAATTTCTAGTTAA 1101 0.4387 MNLKMDSDRAKLFVGGISRDTNEDILKHHFAKYGTVSGSTISIDRSTRSPRGFGFVTFSDLSAADKALQDSHVILGRTVEVKKAIPRNEQQHQNQLHNRGGSNYISNDCSSDNIRTKKIFVGGLPAGISEEEFRKYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKDGNHVYEGFNKLRYKSERGVSKSFPHYSPRNMLPGFAPMPWYGSDGVYAYGTNTYGCWYPMGGYGGNGYAVPSDASRNFWYGPMITGPQTCQVPYANASPSFGYVGGRVGMVGNGAGTWGYNGILGSATNLKFDQPFNANGFVPGNVRSPQGVKQDVDSSSFKGSNGEISS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3215g00011 366 MobiDBLite consensus disorder prediction 347 366 - -
Gabi3215g00011 366 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 294 - -
Gabi3215g00011 366 SUPERFAMILY RNA-binding domain, RBD 112 199 IPR035979 GO:0003676
Gabi3215g00011 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Gabi3215g00011 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 185 IPR000504 GO:0003723
Gabi3215g00011 366 MobiDBLite consensus disorder prediction 343 366 - -
Gabi3215g00011 366 FunFam RNA-binding protein 1 113 203 - -
Gabi3215g00011 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Gabi3215g00011 366 SMART rrm1_1 118 190 IPR000504 GO:0003723
Gabi3215g00011 366 SMART rrm1_1 11 82 IPR000504 GO:0003723
Gabi3215g00011 366 SUPERFAMILY RNA-binding domain, RBD 6 108 IPR035979 GO:0003676
Gabi3215g00011 366 Gene3D - 2 113 IPR012677 -
Gabi3215g00011 366 Gene3D - 114 196 IPR012677 -
Gabi3215g00011 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Gabi3215g00011 366 CDD RRM2_Hrp1p 118 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3215g00011 Gabi-Chr3215 100846 102583 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3215g00011 6 255 Eukaryotic Initiation Factors Gene Family AT3G16380 28.346 2.23e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3215g00011 K14411 - gmx:100816822 604.749