Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3215g00010 ATGTTATACTTGGAAGAACGGTTAGTTATGAAAAAAGCAATACCCAGAAATGAACAGCAACACCAAAACCAATTACATAATAGAGGGGGAAGTAATTATATTAGTAATGACTGTAGCAGTGACAACATTAGGACTAAAAAGATTTTTGTAGGTGGTTTACCTGCTGGTATATCTGAGGAGGAGTTTAGGAAATACTTTGAGAGGTTCGGTCGTATAACTGATGTAGTGGTGATGCAGGATAGTGTAACTCACAGGCCGAGGGGGTTTGGGTTCATCACATTCGATTCAGAAGAATCCGTTCAAAGCGTTATGGTGAAAAGCTTTCATGACTTGAATGGTAGACAAGTGGAGGTCAAGAGGGCTGTTCCAAAAGACGGAAACCATGTTTATGAGGGTTTTAATAAATTAAGATATAAGAGTGAAAGAGGAGTCTCTAAAAGTTTTCCTCATTATAGTCCTAGGAACATGCTCCCTGGCTTTGCTCCAATGCCTTGGTATGGCAGTGATGGGGTATATGCGTACGGAACAAACACCTATGGTTGCTGGTACCCGATGGGTGGGTATGGGGGGAATGGATATGCAGTTCCATCTGATGCTTCTAGGAACTTCTGGTATGGGCCCATGATAACTGGTCCTCAGACATGTCAGGTGCCTTATGCCAATGCTTCACCAAGTTTTGGATATGTGGGTGGTAGGGTTGGAATGGTAGGTAATGGTGCTGGAACCTGGGGGTACAATGGCATTCTTGGGTCTGCAACAAATTTGAAATTTGATCAACCTTTTAATGCCAATGGATTTGTTCCAGGCAATGTGAGATCACCTCAAGGTGTAAAGCAGGATGTTGACTCTTCGAGTTTTAAAGGAAGCAATGGTGAAATTTCTAGTTAA 888 0.4212 MLYLEERLVMKKAIPRNEQQHQNQLHNRGGSNYISNDCSSDNIRTKKIFVGGLPAGISEEEFRKYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKDGNHVYEGFNKLRYKSERGVSKSFPHYSPRNMLPGFAPMPWYGSDGVYAYGTNTYGCWYPMGGYGGNGYAVPSDASRNFWYGPMITGPQTCQVPYANASPSFGYVGGRVGMVGNGAGTWGYNGILGSATNLKFDQPFNANGFVPGNVRSPQGVKQDVDSSSFKGSNGEISS 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3215g00010 295 CDD RRM2_Hrp1p 47 124 - -
Gabi3215g00010 295 SMART rrm1_1 47 119 IPR000504 GO:0003723
Gabi3215g00010 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Gabi3215g00010 295 MobiDBLite consensus disorder prediction 276 295 - -
Gabi3215g00010 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 123 IPR000504 GO:0003723
Gabi3215g00010 295 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 11 223 - -
Gabi3215g00010 295 MobiDBLite consensus disorder prediction 272 295 - -
Gabi3215g00010 295 Gene3D - 43 125 IPR012677 -
Gabi3215g00010 295 FunFam RNA-binding protein 1 42 134 - -
Gabi3215g00010 295 SUPERFAMILY RNA-binding domain, RBD 41 128 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3215g00010 Gabi-Chr3215 100843 102444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3215g00010 35 106 Eukaryotic Initiation Factors Gene Family AT1G22760 36.111 7.38e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3215g00010 K14411 - gmx:100816822 463.766