Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3215g00008 ATGAAGTCCTTGAATGATAGCAACACCGATGATGGAAACAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAAAATGGAGGTTACTTCTGGCCCTCAGCATCATCATCACTACAATCATCAACAACCCCAGGCTTCTGCAGCTTCTGCTACTGTTTCTAATAACACTGTTCCGACAACCTTCTACTTGTCCCCTTCTCACATAACCAACTCCGGAATCTGTTATGGTGTTGGAGAAACCGGTAACTTCCATTCTCCTTTAACCGTTATGCCTCTCAAGTCTGACGGGTCACTTTGTATCATGGAGGCTCTCAGTAGATCACAAACGCAAGTGATGGTGCCTACTTCGTCTCCAAAACTTGAAGACTTTCTAGGTGGTGCAACTATGGGAACTCACGAATATGGAAGTCATGAAAGAGAGGCAATGGCTCTAAGCCTAGACAGCATCTATTATAATAGCCAAAATGCAGAGTCACAACCCAACAGAGACCATTCGCTGGACCTTCTTTCAGAACCCTTCAGGCAACAAGGGCATGTCACTGTTCAATCACATCCATATTATTCAGGACTTGCTTGCAATGGGATATATCAAACACCATTAGAGGAAGAAACCAAGGAAACCCACGTTACAGTTTGCAGCTCCCAAATGTCTCAAATGGCTGAAGAAAGCATTGCTTGCTTGAAAAACTGGGTGCCCCCAAGGGAGTATTCTGCTCAGCATGCTATGGAGCAGCAAATGAACTGTAACATGAGCAATGATCGTGGACCTGCTTCGTCTCTTGGTCCTGTAGGCTGTGGGGAGTTACAATCTCTAAGCCTATCCATGAGTCCTGGTTCTCAATCTAGCTGTGTAACGGTTCCTAGGCAGATCTCACCTTCTGGAACAGACTCGGTGGCCATGGATGGCAAAAAGAGAGGAGCTGCTAAGCTTGGCCAGAAGCAACCAGTGCATAGGAAATCTATTGACACATTCGGGCAGAGAACGTCTCAGTATAGAGGCGTGACAAGGCACAGATGGACTGGTAGATACGAAGCGCATTTGTGGGATAACAGTTGCAAAAAAGAAGGGCAGACCAGGAAAGGAAGACAAGTATATTTGGGTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCCTATGATCTTGCAGCCCTTAAGTACTGGGGACCTTCAACGCATATAAATTTCCCGTTAGAAAATTACCAAACCCAACTTGAAGAAATGAAGAACATGAGCAGGCAGGAATACGTTGCCCACTTGAGAAGAAAAAGCAGTGGATTTTCAAGGGGTGCTTCAATATACAGAGGGGTGACAAGGCACCACCAACATGGAAGATGGCAAGCAAGGATAGGCAGAGTTGCGGGAAACAAGGACCTTTACCTTGGAACATTCAGCACTCAAGAGGAAGCAGCAGAAGCATATGATATAGCTGCAATCAAATTCCGTGGGGTAAATGCAGTCACCAACTTTGACATATCTAGATACGATGTTGAAAGGATCATGGCCAGTAATACTCTGCTAGCTGGGGAATTGGCTAGGCGAAACAAAGATAGTGATAAAAGAACCGAGGCCATTGACTATAATGGTGTATCAAGTCAGAGCAAAGGGGAAGCAGTTCAAGCTGGAAACAACAATGAAAAAGATTCAGACTGGAAGATGGTTTTGCATCATCATCATCCACAGCAAGAGTCAAATAGCTGTGATCAAAAAATTATGAACTGTGGAGGTTATAGAAATTCTGCTTTCTCTGTGGCCCTACAGGATCTAATAGGGACTGATTCAGTAGGTTCTGGCCAGCTCATGTTGGACGACTCTAGCAAGATGAGGACTCATTTTTCAAACCCGTCCTCGCTGGTGACCAGTTTAAGCAGTTCAAGAGAAGCCAGTCCTGATAAAACAGGCCCCTCACTATTTCCAAAGCGCCCAATGGAAACAAAGAGTGTCAACCACATTGCTTCTGGTGTTAGTTCTTGGTTTCCCTCACCAGCACCAGCTCAAATAAGGCCTGCTGCTGCAGCTATTAGTTTGTCTCACTTGCCAGTTTTTGCTGCTTGGAACGATACCTAG 2070 0.4527 MKSLNDSNTDDGNNHNWLGFSLSPHMKMEVTSGPQHHHHYNHQQPQASAASATVSNNTVPTTFYLSPSHITNSGICYGVGETGNFHSPLTVMPLKSDGSLCIMEALSRSQTQVMVPTSSPKLEDFLGGATMGTHEYGSHEREAMALSLDSIYYNSQNAESQPNRDHSLDLLSEPFRQQGHVTVQSHPYYSGLACNGIYQTPLEEETKETHVTVCSSQMSQMAEESIACLKNWVPPREYSAQHAMEQQMNCNMSNDRGPASSLGPVGCGELQSLSLSMSPGSQSSCVTVPRQISPSGTDSVAMDGKKRGAAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTQLEEMKNMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKDSDKRTEAIDYNGVSSQSKGEAVQAGNNNEKDSDWKMVLHHHHPQQESNSCDQKIMNCGGYRNSAFSVALQDLIGTDSVGSGQLMLDDSSKMRTHFSNPSSLVTSLSSSREASPDKTGPSLFPKRPMETKSVNHIASGVSSWFPSPAPAQIRPAAAAISLSHLPVFAAWNDT 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3215g00008 689 MobiDBLite consensus disorder prediction 526 546 - -
Gabi3215g00008 689 CDD AP2 433 494 IPR001471 GO:0003700|GO:0006355
Gabi3215g00008 689 SUPERFAMILY DNA-binding domain 433 494 IPR016177 GO:0003677
Gabi3215g00008 689 CDD AP2 331 398 IPR001471 GO:0003700|GO:0006355
Gabi3215g00008 689 SUPERFAMILY DNA-binding domain 331 400 IPR016177 GO:0003677
Gabi3215g00008 689 MobiDBLite consensus disorder prediction 613 643 - -
Gabi3215g00008 689 MobiDBLite consensus disorder prediction 515 546 - -
Gabi3215g00008 689 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 115 566 - -
Gabi3215g00008 689 FunFam AP2-like ethylene-responsive transcription factor 433 494 - -
Gabi3215g00008 689 MobiDBLite consensus disorder prediction 284 298 - -
Gabi3215g00008 689 MobiDBLite consensus disorder prediction 284 303 - -
Gabi3215g00008 689 PRINTS Ethylene responsive element binding protein signature 333 344 IPR001471 GO:0003700|GO:0006355
Gabi3215g00008 689 PRINTS Ethylene responsive element binding protein signature 474 494 IPR001471 GO:0003700|GO:0006355
Gabi3215g00008 689 ProSiteProfiles AP2/ERF domain profile. 434 492 IPR001471 GO:0003700|GO:0006355
Gabi3215g00008 689 ProSiteProfiles AP2/ERF domain profile. 332 398 IPR001471 GO:0003700|GO:0006355
Gabi3215g00008 689 Gene3D AP2/ERF domain 331 400 IPR036955 GO:0003700|GO:0006355
Gabi3215g00008 689 Gene3D AP2/ERF domain 434 494 IPR036955 GO:0003700|GO:0006355
Gabi3215g00008 689 SMART rav1_2 434 498 IPR001471 GO:0003700|GO:0006355
Gabi3215g00008 689 SMART rav1_2 332 404 IPR001471 GO:0003700|GO:0006355
Gabi3215g00008 689 FunFam AP2-like ethylene-responsive transcription factor ANT 331 400 - -
Gabi3215g00008 689 MobiDBLite consensus disorder prediction 28 47 - -
Gabi3215g00008 689 Pfam AP2 domain 434 484 IPR001471 GO:0003700|GO:0006355
Gabi3215g00008 689 Pfam AP2 domain 332 390 IPR001471 GO:0003700|GO:0006355
Gabi3215g00008 689 MobiDBLite consensus disorder prediction 613 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3215g00008 Gabi-Chr3215 74889 78149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3215g00008 225 514 AP2-EREBP Transcription Factor Family AT1G72570 62.876 1.33e-124 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi3215g00008 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3215g00008 K09285 - qsa:O6P43_015953 1002.28