Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3215g00007 ATGGGTGGTCTTGAAAATGCCATGGGGCTTCAACATGAAAACGAGGGCATTCTGAATTGTCCATCATCGGGTTTGAGGACAAATGTTACTGAAATGACAATTAGTTCTGTGTCTATGGCTATGCCTTCAGGCGTAGCTAATCCTTTTCTTGCTTCTTCTGCTTGGGATCCACTTGTTTCGTTGAGTCAGATTCAAACTTTTGAAGGCTCTCCAATGGTTTCTCATGGCAAGTTTGCCCATTCATCTTACCCTCTTGCTTTGGAAAATCAAGGAATGAGTAGCAACTCTCACCTTGTTCAATATATGTCTGACTCAAATATTGCGGACATGGTCCCCAAGGTTTCCTCCTATGGAAGTGGGAGCTTCTCAGAAATGGTTGACTCCATTGGCCAACCTGGGTCTGGTGATATAGCTAACAAAGGGTATCAGCCAAATTATAATCCGAACAATGAAATGGGAATCGAAAGGGGTCCAAAAAATAATGAGCAATCACAGGGTGAAGGTTCAACACCTGAAGAGGGAGAAACAGGACCCACACCTAGTGAAAATAGAAGAAAGCGTGGACTTCACTATAATTCTACTTTCAGCCCAAATAAGAATGCTGAGGAGGATGGAATTAAAGATTCTTCTGGGAAGAGCTCTTGTGGTGTGAAAGAGCAATATGAAAAGAAATCAAAAATTGAACAAAATGCTAGTGCAGATTTACGTGGTGAGCAATTGCTGAAGCAAAAGAAAGATAGCTCTCAGAGCGGAGAAGCTCCCAAAGAAAATTTCATTCATGTTAGAGCCCGAAGAGGTCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGGTAAGGAGAGAAAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGTGACAAGATAATGGGCAAAGCAGTAATGCTTGATGAGATTATAAATTATGTGCAGTCACTGCAACAGCAGGTTGAGTTTCTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAATTTTGACGTAGAGCGGATTCTCGTCAAAGATATTCTCCAGCCACGCATTGGACATGGACCTATTGGTATCAGCTGCTCTCACTCATTCCCCTCTAGAAATTTCCTGGGAACACTAGCAGGCATGCCCAGCACATCAACACAATTCCCTCCTTTGCCACTGCAGCCTGTTTTGGACCACGACTTCCCAAGCCTCTATGGAATGAGCTATGATTCAAGTACAGGTCTTGACAATATGGACCTAATGGATGGTTGA 1260 0.4333 MGGLENAMGLQHENEGILNCPSSGLRTNVTEMTISSVSMAMPSGVANPFLASSAWDPLVSLSQIQTFEGSPMVSHGKFAHSSYPLALENQGMSSNSHLVQYMSDSNIADMVPKVSSYGSGSFSEMVDSIGQPGSGDIANKGYQPNYNPNNEMGIERGPKNNEQSQGEGSTPEEGETGPTPSENRRKRGLHYNSTFSPNKNAEEDGIKDSSGKSSCGVKEQYEKKSKIEQNASADLRGEQLLKQKKDSSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCDKIMGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERILVKDILQPRIGHGPIGISCSHSFPSRNFLGTLAGMPSTSTQFPPLPLQPVLDHDFPSLYGMSYDSSTGLDNMDLMDG 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3215g00007 419 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 317 IPR011598 GO:0046983
Gabi3215g00007 419 FunFam Basic helix-loop-helix transcription factor 264 336 - -
Gabi3215g00007 419 Gene3D - 264 338 IPR036638 GO:0046983
Gabi3215g00007 419 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 265 335 IPR036638 GO:0046983
Gabi3215g00007 419 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 160 364 IPR024097 GO:0006355
Gabi3215g00007 419 SMART finulus 273 323 IPR011598 GO:0046983
Gabi3215g00007 419 CDD bHLH_AtBPE_like 257 342 - -
Gabi3215g00007 419 MobiDBLite consensus disorder prediction 217 231 - -
Gabi3215g00007 419 MobiDBLite consensus disorder prediction 138 177 - -
Gabi3215g00007 419 MobiDBLite consensus disorder prediction 238 255 - -
Gabi3215g00007 419 MobiDBLite consensus disorder prediction 127 255 - -
Gabi3215g00007 419 Pfam Helix-loop-helix DNA-binding domain 270 318 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3215g00007 Gabi-Chr3215 50000 52962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3215g00007 1 407 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 40.000 2.89e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3215g00007 HLH 4.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3215g00007 - - gmx:100801930 539.265