Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3215g00006 ATGGGTGGTCTTGAAAATGCCATGGGGCTTCAACATGAAAACGAGGGCATTCTGAATTGTCCATCATCGGGTTTGAGGACAAATGTTACTGAAATGACAATTAGTTCTGTGTCTATGGCTATGCCTTCAGGCGTAGCTAATCCTTTTCTTGCTTCTTCTGCTTGGGATCCACTTGTTTCGTTGAGTCAGATTCAAACTTTTGAAGGCTCTCCAATGGTTTCTCATGGCAAGTTTGCCCATTCATCTTACCCTCTTGCTTTGGAAAATCAAGGAATGAGTAGCAACTCTCACCTTGTTCAATATATGTCTGACTCAAATATTGCGGACATGGTCCCCAAGGTTTCCTCCTATGGAAGTGGGAGCTTCTCAGAAATGGTTGACTCCATTGGCCAACCTGGGTCTGGTGATATAGCTAACAAAGGGTATCAGCCAAATTATAATCCGAACAATGAAATGGGAATCGAAAGGGGTCCAAAAAATAATGAGCAATCACAGGGTGAAGGTTCAACACCTGAAGAGGGAGAAACAGGACCCACACCTAGTGAAAATAGAAGAAAGCGTGGACTTCACTATAATTCTACTTTCAGCCCAAATAAGAATGCTGAGGAGGATGGAATTAAAGATTCTTCTGGGAAGAGCTCTTGTGGTGTGAAAGAGCAATATGAAAAGAAATCAAAAATTGAACAAAATGCTAGTGCAGATTTACGTGGTGAGCAATTGCTGAAGCAAAAGAAAGATAGCTCTCAGAGCGGAGAAGCTCCCAAAGAAAATTTCATTCATGTTAGAGCCCGAAGAGGTCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGGTAAGGAGAGAAAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGTGACAAGATAATGGGCAAAGCAGTAATGCTTGATGAGATTATAAATTATGTGCAGTCACTGCAACAGCAGGTTGAGTTTCTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAATTTTGACGTAGAGCGGATTCTCGTCAAAGATATTCTCCAGCCACGCATTGGACATGGACCTATTGGTATCAGCTGCTCTCACTCATTCCCCTCTAGAAATTTCCTGGGAACACTAGCAGGCATGCCCAGCACATCAACACAATTCCCTCCTTTGCCACTGCAGCCTGTTTTGGACCACGACTTCCCAAGCCTCTATGGAATGAGCTATGATTCAAGTACAGGATGGTTGAAAACAGAATTATAG 1251 0.4317 MGGLENAMGLQHENEGILNCPSSGLRTNVTEMTISSVSMAMPSGVANPFLASSAWDPLVSLSQIQTFEGSPMVSHGKFAHSSYPLALENQGMSSNSHLVQYMSDSNIADMVPKVSSYGSGSFSEMVDSIGQPGSGDIANKGYQPNYNPNNEMGIERGPKNNEQSQGEGSTPEEGETGPTPSENRRKRGLHYNSTFSPNKNAEEDGIKDSSGKSSCGVKEQYEKKSKIEQNASADLRGEQLLKQKKDSSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCDKIMGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERILVKDILQPRIGHGPIGISCSHSFPSRNFLGTLAGMPSTSTQFPPLPLQPVLDHDFPSLYGMSYDSSTGWLKTEL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3215g00006 416 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 317 IPR011598 GO:0046983
Gabi3215g00006 416 Pfam Helix-loop-helix DNA-binding domain 270 318 IPR011598 GO:0046983
Gabi3215g00006 416 Gene3D - 264 338 IPR036638 GO:0046983
Gabi3215g00006 416 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 160 364 IPR024097 GO:0006355
Gabi3215g00006 416 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 265 335 IPR036638 GO:0046983
Gabi3215g00006 416 FunFam Basic helix-loop-helix transcription factor 264 336 - -
Gabi3215g00006 416 SMART finulus 273 323 IPR011598 GO:0046983
Gabi3215g00006 416 CDD bHLH_AtBPE_like 257 342 - -
Gabi3215g00006 416 MobiDBLite consensus disorder prediction 138 177 - -
Gabi3215g00006 416 MobiDBLite consensus disorder prediction 217 231 - -
Gabi3215g00006 416 MobiDBLite consensus disorder prediction 127 255 - -
Gabi3215g00006 416 MobiDBLite consensus disorder prediction 238 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3215g00006 Gabi-Chr3215 50000 52962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3215g00006 1 416 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 39.492 2.21e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3215g00006 HLH 4.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3215g00006 - - gmx:100801930 534.258