Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3203g00070 ATGATTGGGGGAGCTGATTCGCAGAGGAGGAGGAGAATCGCCATCATTGGCGTCTCCACCTTCTTGCTGGTGGCTATGGTCGTCGCCGTCACAGTTAGCGTCAACCTAAAGAATGATTCAAACGGAAATGTAAAGGATAGCGGCAAATCGCACGTATCATCCTCCGTGAAAGCTGTGAAAACCCTTTGTGCACCTACAGATTACAAGAAGGAATGCGAGGAGAGTCTCACAGCGCAAGCTGGCAACACCACCGACGCAAGAGAACTCATTAAAATCGCGTTTAACATAACCATAAAGAAAATCGGTGAGGGACTCGAGAAAACACAACTCATGCATGAGGCTGAGAAAGACCCTAGAACGAAGGAGGCACTCGACACATGCAAGCAACTCATGAATCTCTCAATCGAGGAATTCAAGAGATCACTTGAGAAATTCGGCACATTCGATCTCAACCATCTTGACCAGATCCTCACCAGTTTGAAGGTTTGGCTCAGCGGTGCAGTCACATACCAAGAAACATGTTTGGATGCGTTTGAGAACACAACAACCCAAGCTGGTAATAAGATGAAGGAGATCTTGAAAACTGCCATGCACATGAGCAGCAATGGCCTTTCCATCATCACCGAACTCTCCAAAACTCTAACAGATATGAACATCACAAAACCTTCACGCCGCCTCTTGCAGGATGCAGATGACGAAGCAGTTCTTGGTCACGATGACTTTGAGCTTCCTGATTGGGTCGATGATCGTGTTGGTGTTCGTAAACTCCTTAAGATGACTCAGCGAAAACTCGGTGCTCAAGTGGTTGTAGCCAAGGACGGAACTGGAAATTTCACTACCATCAACGACGCATTGAAGTCGGTGCCCATGAAAAACCTAAAGCCATACGTTATCTACGTTAAGCAGGGCGTTTACAATGAGTACGTTGAAGTTTCCAGAAATATGACCCACGTCGTTATGATCGGTGATGGTGCCAAAAAGACAAGGATCACTGGTAACAAAAACTTCATCGATGGAGTTGGTACCTACAGAACCGCCACTGTTGCTGTTCTTGGAGACTACTTCGTTGCCTTGGGTATCGGGTTTGAGAACTCTGCTGGTCCACAAAAACATCAAGCAGTAGCCCTAAGGGTTCAAGCTGACAAGTCCATCTTCTACAAATGCCGAATGGATGGTTACCAAGACACACTCTATGTCCACACCTTGCGTCAATTCTATAGGGATTGCATCATTTCAGGTACCATCGACTTCGTCTTTGGTGATGCAGTAGCAGTTCTCCAAAACTGCACATTCGTGGTAAGAAAGCCATTGGAAAACCAACAATGCATCGTGACCGCACAGGGAAGGAAGGAGAGGAGCCAACCATCAGGATTAATCATCCAAGGAGGTAGCATTGTGTCAGACCCAAAGTACTACCCAGTTAGGTTCGATAACAAAGCCTACCTTGCACGTCCATGGAAAAATTTCTCAAGGGCAATCTTCATGGACACATACATTGGTGATTTGATCACACCCGATGGTTACATGCCATGGCAATCATTGGAGGGTCTTTCAGGAATGAACACTTGCTTCTATGCTGAGTACAACAACCGTGGCCCTGGTTCAGACAAATCAAAGCGAGTGAAATGGCAAGGGGTTAAGACACTTAACTCAGTAGCTGCAACAAATTTCTTACCAACCAGGTTCTTCCATGGAGATGATTGGATTAGGGTTACTAGAATTCCTTACGACTCTGGAAAAGACGCTTCCCCCGTTCACTGA 1761 0.4617 MIGGADSQRRRRIAIIGVSTFLLVAMVVAVTVSVNLKNDSNGNVKDSGKSHVSSSVKAVKTLCAPTDYKKECEESLTAQAGNTTDARELIKIAFNITIKKIGEGLEKTQLMHEAEKDPRTKEALDTCKQLMNLSIEEFKRSLEKFGTFDLNHLDQILTSLKVWLSGAVTYQETCLDAFENTTTQAGNKMKEILKTAMHMSSNGLSIITELSKTLTDMNITKPSRRLLQDADDEAVLGHDDFELPDWVDDRVGVRKLLKMTQRKLGAQVVVAKDGTGNFTTINDALKSVPMKNLKPYVIYVKQGVYNEYVEVSRNMTHVVMIGDGAKKTRITGNKNFIDGVGTYRTATVAVLGDYFVALGIGFENSAGPQKHQAVALRVQADKSIFYKCRMDGYQDTLYVHTLRQFYRDCIISGTIDFVFGDAVAVLQNCTFVVRKPLENQQCIVTAQGRKERSQPSGLIIQGGSIVSDPKYYPVRFDNKAYLARPWKNFSRAIFMDTYIGDLITPDGYMPWQSLEGLSGMNTCFYAEYNNRGPGSDKSKRVKWQGVKTLNSVAATNFLPTRFFHGDDWIRVTRIPYDSGKDASPVH 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3203g00070 586 CDD PMEI-like_3 61 212 - -
Gabi3203g00070 586 Pfam Plant invertase/pectin methylesterase inhibitor 58 206 IPR006501 GO:0004857
Gabi3203g00070 586 ProSitePatterns Pectinesterase signature 1. 292 311 IPR018040 -
Gabi3203g00070 586 Gene3D - 262 580 IPR012334 -
Gabi3203g00070 586 SUPERFAMILY Pectin lyase-like 266 577 IPR011050 -
Gabi3203g00070 586 ProSitePatterns Pectinesterase signature 2. 411 420 IPR033131 -
Gabi3203g00070 586 NCBIfam pectinesterase inhibitor domain 50 210 IPR006501 GO:0004857
Gabi3203g00070 586 PANTHER PECTINESTERASE 20 570 - -
Gabi3203g00070 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 211 IPR035513 -
Gabi3203g00070 586 FunFam Pectinesterase 55 211 - -
Gabi3203g00070 586 SMART PMEI_2 54 206 IPR006501 GO:0004857
Gabi3203g00070 586 Pfam Pectinesterase 267 566 IPR000070 GO:0030599|GO:0042545
Gabi3203g00070 586 FunFam Pectinesterase 261 580 - -
Gabi3203g00070 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 212 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3203g00070 Gabi-Chr3203 494504 496928 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3203g00070 6 579 Carbohydrate Esterase AT3G05610 49.740 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3203g00070 K01051 - gmx:100801686 929.472