Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3203g00068 ATGGCCTTGGTTAATTTCCTTTTCATTCTCATGCTTTTACCCTCATTTGAGGCTCTCTCAGATGAAACTCCCTCAGACATCCAAACCCAAGACATGCATGCCTTGATTGCACAAGCTTGCATGGATATTGAAAACCAAGACTCATGCCTCAGAAACATTCAAAACGAGCTCATCAAAATTGGTCCTCCAAGCCCTACTTCAGTCTTAAGTGCCGCACTCAGGACCACAATGAATGACGCCATAGGTGCCATTGACAACATGACAAAGTTCAGTACATTTTCTTATAATTATCGCGAGCAACTAGCCATAGAAGATTGCAAGGAGCTCCTTGATTTCTCTGTATCCGAGCTGGCATGGTCTTTAGGTGAGATGAGGAGAATTCGAGGAGGTGATAACAACGTGCAATATGAGGGCAACCTTGAAGCTTGGCTCAGTGCAGCACTGAGCAACCAAGACACATGCCTTGAAGGCTTTGAGGGCACTGATAGACGTCTTGAGAGTTACATCAGTGGAAGCTTGAATCAAGTCACACAACTTATCAGCAATGTTTTGACTTTGTACACTCAATTGCATAGCTTGCCCTTCAGGTCTCCAAGGAACAATACTCAAACAAGTGAAAGCTTGGAATTTCCTGAATGGATGACTGAGGGTGATCAAGATCTACTTAAATCCAAGTCACATGCTGCACATGCAGACGCTGTTGTGGCATTGGATGGGAGTGGCCATTACCGCACAATCACAGAAGCTGTTAATGCAGCTCCCAGTCATAGCAACAGGAGGTATGTTATCTACGTGAAGAAGGGACTTTACAAGGAGAATGTTGATATGAAGAAGAAGATGACCAACATCATGCTCGTTGGTGATGGTATTGGCCAAACCATTATCACAAGCAACCGGAATTTCATGCAAGGTTGGACCACTTTTCGAACTGCCACACTTGCTGTATCCGGGAAGGGTTTTATTGCAAGGGACATGTCATTCCGGAACACAGCTGGACCAGTAAATCATCAAGCTGTGGCACTGCGTGTGGATTCAGACCAATCTGCGTTCTATAGGTGCAGCGTGGAAGGGAACCAAGACACCCTTTACGCCCACTCATTGAGACAGTTCTACCGTGAATGTGAAATCTATGGCACCATAGACTTCATTTTTGGCAATGGGGCTGCTGTGTTGCAAAATTGCAAGATATACACTAGAGTTCCACTTCCATTACAGAAGGTTACCATCACGGCCCAAGGCAGGAAAAGCCCACATCAGAACACTGGTTTTACTATTCAGGATAGCTTTGTTTTGGCCACACAACCTACATATTTGGGTAGGCCATGGAAGCAATACTCGAGAACAGTTTACATTAACACATACATGAGTGGGCTTGTCCAGCCTCGAGGGTGGCTTGAGTGGTTTGGAAACTTTGCATTGGACACTTTGTGGTACGGTGAGTACAAGAATTATGGGCCCGGTTCATCACTCGCAGGTAGAGTCAAATGGCCCGGTTTTCATGTAATTAAAGATGCTTCTACCGCCAGTTTCTTCACGGTTCAGCGGTTCATTAATGGGGATTCATGGCTGCCGGGAACAGGCATCAGGTTCACTGGAGGCTTGACCAATTGA 1611 0.4556 MALVNFLFILMLLPSFEALSDETPSDIQTQDMHALIAQACMDIENQDSCLRNIQNELIKIGPPSPTSVLSAALRTTMNDAIGAIDNMTKFSTFSYNYREQLAIEDCKELLDFSVSELAWSLGEMRRIRGGDNNVQYEGNLEAWLSAALSNQDTCLEGFEGTDRRLESYISGSLNQVTQLISNVLTLYTQLHSLPFRSPRNNTQTSESLEFPEWMTEGDQDLLKSKSHAAHADAVVALDGSGHYRTITEAVNAAPSHSNRRYVIYVKKGLYKENVDMKKKMTNIMLVGDGIGQTIITSNRNFMQGWTTFRTATLAVSGKGFIARDMSFRNTAGPVNHQAVALRVDSDQSAFYRCSVEGNQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQNTGFTIQDSFVLATQPTYLGRPWKQYSRTVYINTYMSGLVQPRGWLEWFGNFALDTLWYGEYKNYGPGSSLAGRVKWPGFHVIKDASTASFFTVQRFINGDSWLPGTGIRFTGGLTN 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3203g00068 536 FunFam Pectinesterase 226 534 - -
Gabi3203g00068 536 Pfam Pectinesterase 232 520 IPR000070 GO:0030599|GO:0042545
Gabi3203g00068 536 ProSitePatterns Pectinesterase signature 2. 376 385 IPR033131 -
Gabi3203g00068 536 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 191 IPR035513 -
Gabi3203g00068 536 SMART PMEI_2 31 186 IPR006501 GO:0004857
Gabi3203g00068 536 Gene3D - 226 534 IPR012334 -
Gabi3203g00068 536 FunFam Pectinesterase 33 192 - -
Gabi3203g00068 536 Pfam Plant invertase/pectin methylesterase inhibitor 35 185 IPR006501 GO:0004857
Gabi3203g00068 536 NCBIfam pectinesterase inhibitor domain 6 191 IPR006501 GO:0004857
Gabi3203g00068 536 SUPERFAMILY Pectin lyase-like 227 533 IPR011050 -
Gabi3203g00068 536 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 191 IPR035513 -
Gabi3203g00068 536 PANTHER PECTINESTERASE 16 524 - -
Gabi3203g00068 536 CDD PMEI-like_4 40 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3203g00068 Gabi-Chr3203 480390 483026 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3203g00068 1 536 Carbohydrate Esterase AT3G05620 63.388 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3203g00068 K01051 - gmx:100810565 944.495