Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3203g00050 ATGGCAAGGGGAGGAAAGGTTAGTGGCAAACGCAATTTCAGGAAAAAGGTTCGGTCAAAGGAAGGTGGTTCTGATGATTCTGATGAAGATTATGTGGTTTCAGATGATGCTGGAGATGTGTCTGATTGTCCAGAGGAGGATTTATCTTCTTTAGATGGATGCGCATCCGAGGAGAGTTTTGGTGGTTTTCCAGAAGAGAAGGAGGAAATTCAACGAGTGAGGAAATTCAATAGATCAAAGGCCAAAAATGGCATTTGTGGTCAGCAGAAAATTGCAAGTAAAACCTCACGGAAGAGGCAAAGGATTACATATGCAGAACAAGAAGAACAAGAAAAAGAGGCAGATGGAGATGAGGATGAGGATGAGGATTTCAATTTTGATGACGATGAGGAATTTACAATAGAGGAGGAAGATTACTCAGATGAGGAAGAAGAAACAAGGGGGAGAAAGAAGAAAAATAATGCCATGAAAATGGGCAAGAAGATTTTGGGGAGAAGGGCTTCTGTGACTTCTACCAGAGGTAGGAAAAGGAGGAGATCTAGCGCTTCAAAGAAGCCTTTGAGAAAGAAAAGAAGAAAGAATGGAGGATTAAGGAGGAAAGTACAATGTGACAATGCAGATGATTTTATAGATAACGGCCCAGCCATCAGGACAAAGAGTTGGAAAAAACCAGGCCGGAAAAGGAGAAGACTTCTTGAAGATTACAATTCCAATTCTGATTGTTTGTCTGGATCATCTGATTATGAGTTTACTATCTCTGAAGAAGAGAGAGAACAGTTGAGAGAAGCCGAGGAATTATGTAGAAGTTTAAGAAGGAACTTGAGGAGTTCTTCCATTCTAGTGAAAAATGAGGAGGTTGGAGTACATGAAGTTCCACATCAGCAACGGAAGCCCCCGGGCCGGAAGGGTAAGGAAAAGATAGAGGAATCTCAACAAAGTAAGGGTAAAGAAAAGGTAGAGGATTTAAAAAGTGAGGTGGGAAAGCAGGTGTGTGGAATTTGTCTGTCTGAGGAAAATAAAAGAAGAGTAAGGGGAGTACTAAGTTGTTGCGCTCACTATTTTTGCTTTGCTTGCATTATGGAGTGGTCGAAGGTGGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGTAAGCCTGCACGATCAACGGAGGGGATCGACTTGAGAGAAACGGTGATACAAGTGCCAGAACGTGATCAGGTTTATCAGCCCTCCGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGTATGTTATTTGTTCAGAGTGCCATCAAGGCGGAGATGATGGCCTCATGTTACTCTGTGATATCTGTGATACCCCTGCACACACTTATTGTGTTGGTTTGGGGCGGGAAGTACCTGAAGGTAATTGGTATTGTGATGGTTGTAGACCAGTTGCTTTGGGATCTTCAAGCTCCCAGGTTCAAGAACGTGTGGCTGATCCAGGGGTGACAACCCAAAGCCTTCCTGTTAGACCATCACCAGTTCATGTACGAGAAAGTATAGACCTCAACTTGATGTCTTCACCTCGTGCATCTTTTAATCAAGGTTTCGGGCATCTTTCATCTAGATTTTCTGGCAGAAGTGTTGAAGGAGGCTCTCCTGTATCTGGAGGAGGGGCACCAACTTTATCAGAGAGACGCTGGATACACCGTCAAATTCAGCAGCTACTTTCAATAGATAGAATGACTTCTCCAACTGGCAGAACTGATGGTATTTCAGCTACCGGTTCAATGAGTAACTTATATAGTTCTCAAATTGATCAAAGTAGGGAACCAGCCACTCAACATACAAGGACACAGGAAGTGGGAACATCATATCACACATTCTTTGAGGAGAGATTATGCAACTATACTTCTCCATTGATGCAGAATGGAGATCCCTTCTCCATAAGAATAAGCAATGCAAAAAGGCCAGTGGTTCAGGATTCAACTACGTTTGTCAACAGGCCTGTGAATGGGATGCTATGGCCTGGACTTGCGGGGACACCCACCATATCAGATTATCAGTGCAGCAGTAGACCAAACATTGTCACTGATGGTAGTTTAACCCCTGCTTTCAAAGAAGAGAGTAACTTCCACAATGTGAAGGAGCAGTTGCAGTCAATGGTTAAAAGCCACCTGAAGAGCTTGTCTCGAGATATTGATTTAGGTTATACTACCTTCAAGGACATTGCAAGGAGTTCTACGCATACCATACTCGCAGCATGTGGTCTTGAGCACAAGAAGAGTGAAGTTTGCACTGTGCCTCCACCATCCGTCTGTCCCCACACTGAATTAATGGCTAGTGGACAAACAAGTCTGATTAAAGGTTGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAAAGGATTTTGGACACAAGAATGTCGTCACAGTGGTTACGATTAGGACTTTAG 2421 0.4316 MARGGKVSGKRNFRKKVRSKEGGSDDSDEDYVVSDDAGDVSDCPEEDLSSLDGCASEESFGGFPEEKEEIQRVRKFNRSKAKNGICGQQKIASKTSRKRQRITYAEQEEQEKEADGDEDEDEDFNFDDDEEFTIEEEDYSDEEEETRGRKKKNNAMKMGKKILGRRASVTSTRGRKRRRSSASKKPLRKKRRKNGGLRRKVQCDNADDFIDNGPAIRTKSWKKPGRKRRRLLEDYNSNSDCLSGSSDYEFTISEEEREQLREAEELCRSLRRNLRSSSILVKNEEVGVHEVPHQQRKPPGRKGKEKIEESQQSKGKEKVEDLKSEVGKQVCGICLSEENKRRVRGVLSCCAHYFCFACIMEWSKVESRCPLCKQRFKTISKPARSTEGIDLRETVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDTPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQERVADPGVTTQSLPVRPSPVHVRESIDLNLMSSPRASFNQGFGHLSSRFSGRSVEGGSPVSGGGAPTLSERRWIHRQIQQLLSIDRMTSPTGRTDGISATGSMSNLYSSQIDQSREPATQHTRTQEVGTSYHTFFEERLCNYTSPLMQNGDPFSIRISNAKRPVVQDSTTFVNRPVNGMLWPGLAGTPTISDYQCSSRPNIVTDGSLTPAFKEESNFHNVKEQLQSMVKSHLKSLSRDIDLGYTTFKDIARSSTHTILAACGLEHKKSEVCTVPPPSVCPHTELMASGQTSLIKGCCSSCFDSFVGDVVKRILDTRMSSQWLRLGL 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3203g00050 806 ProSiteProfiles Zinc finger PHD-type profile. 421 470 IPR019787 -
Gabi3203g00050 806 ProSitePatterns Zinc finger RING-type signature. 350 359 IPR017907 -
Gabi3203g00050 806 MobiDBLite consensus disorder prediction 28 46 - -
Gabi3203g00050 806 ProSiteProfiles Zinc finger RING-type profile. 331 373 IPR001841 -
Gabi3203g00050 806 SUPERFAMILY FYVE/PHD zinc finger 394 469 IPR011011 -
Gabi3203g00050 806 MobiDBLite consensus disorder prediction 170 197 - -
Gabi3203g00050 806 Pfam PHD-finger 423 469 IPR019787 -
Gabi3203g00050 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 471 IPR013083 -
Gabi3203g00050 806 MobiDBLite consensus disorder prediction 61 76 - -
Gabi3203g00050 806 PANTHER F18C1.6 PROTEIN 1 796 - -
Gabi3203g00050 806 MobiDBLite consensus disorder prediction 1 228 - -
Gabi3203g00050 806 Pfam Ring finger domain 330 373 IPR001841 -
Gabi3203g00050 806 SUPERFAMILY RING/U-box 330 379 - -
Gabi3203g00050 806 CDD RING-HC_Topors 329 376 - -
Gabi3203g00050 806 Coils Coil 253 273 - -
Gabi3203g00050 806 MobiDBLite consensus disorder prediction 110 142 - -
Gabi3203g00050 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 394 IPR013083 -
Gabi3203g00050 806 SMART ring_2 331 372 IPR001841 -
Gabi3203g00050 806 MobiDBLite consensus disorder prediction 286 319 - -
Gabi3203g00050 806 SMART PHD_3 423 468 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3203g00050 Gabi-Chr3203 349636 353413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3203g00050 331 376 C3H Transcription Factor Family AT2G39100 45.652 1.20e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3203g00050 PHD 3.8e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3203g00050 - - gmx:100797448 952.97