Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3203g00047 ATGGTAATCATGGATCTCAATGTGAAGGAATTGGAATTGAGTGAGAACAAGAAGTGTTGTACTGATTGCAGAACCACCAAAACCCCACTCTGGAGAGGAGGACCAGCTGGACCCAAGACGCTGTGCAACGCTTGTGGAATTAGGTACCGGAAGAGAAGGGCTTCTATGGTGGGAATGAACAAAGGACAAGAAAAGAAGAGAGAGAGAGCACAAAACGGCACCAGCAGCAGCAGCAGCAGCAGCTCTGGTGATACGGTTGGTGTTGGTGGCGGAAGAGAATTAAGGGAGTCTTTAAAAGTGAAGTTAATGGCGTTGGGTGAGGAGGTTTTGTTGCAGCGATCACCCTCTGTTCTGAAGAAACAGAGGAGGAACATGTTAGGTGAAGAGGAACAAGCAGCTGTTTGTTTGATGGCATTGTCCTGCGGCTTTGTTTTCGCTTGA 441 0.4785 MVIMDLNVKELELSENKKCCTDCRTTKTPLWRGGPAGPKTLCNACGIRYRKRRASMVGMNKGQEKKRERAQNGTSSSSSSSSGDTVGVGGGRELRESLKVKLMALGEEVLLQRSPSVLKKQRRNMLGEEEQAAVCLMALSCGFVFA 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3203g00047 146 ProSiteProfiles GATA-type zinc finger domain profile. 14 50 IPR000679 GO:0006355|GO:0043565
Gabi3203g00047 146 Pfam GATA zinc finger 20 53 IPR000679 GO:0006355|GO:0043565
Gabi3203g00047 146 Gene3D - 15 78 IPR013088 GO:0006355|GO:0008270
Gabi3203g00047 146 MobiDBLite consensus disorder prediction 57 71 - -
Gabi3203g00047 146 MobiDBLite consensus disorder prediction 55 90 - -
Gabi3203g00047 146 PANTHER OS01G0976800 PROTEIN 11 145 - -
Gabi3203g00047 146 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 54 - -
Gabi3203g00047 146 ProSitePatterns GATA-type zinc finger domain. 20 45 IPR000679 GO:0006355|GO:0043565
Gabi3203g00047 146 CDD ZnF_GATA 20 67 IPR000679 GO:0006355|GO:0043565
Gabi3203g00047 146 SMART GATA_3 14 72 IPR000679 GO:0006355|GO:0043565
Gabi3203g00047 146 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3203g00047 Gabi-Chr3203 331776 333148 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3203g00047 13 146 C2C2-Gata Transcription Factor Family AT3G06740 50.370 2.67e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi3203g00047 GATA 6e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3203g00047 - - qsa:O6P43_011056 192.2