Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3203g00046 ATGGAATTGGAATTGAGTGAGAACAAGAAGTGTTGTACTGATTGCAGAACCACCAAAACCCCACTCTGGAGAGGAGGACCAGCTGGACCCAAGACGCTGTGCAACGCTTGTGGAATTAGGTACCGGAAGAGAAGGGCTTCTATGGTGGGAATGAACAAAGGACAAGAAAAGAAGAGAGAGAGAGCACAAAACGGCACCAGCAGCAGCAGCAGCAGCAGCTCTGGTGATACGGTTGGTGTTGGTGGCGGAAGAGAATTAAGGGAGTCTTTAAAAGTGAAGTTAATGGCGTTGGGTGAGGAGGTTTTGTTGCAGCGATCACCCTCTGTTCTGAAGAAACAGAGGAGGAACATGTTAGGTGAAGAGGAACAAGCAGCTGTTTGTTTGATGGCATTGTCCTGCGGCTTTGTTTTCGCTTGA 417 0.4844 MELELSENKKCCTDCRTTKTPLWRGGPAGPKTLCNACGIRYRKRRASMVGMNKGQEKKRERAQNGTSSSSSSSSGDTVGVGGGRELRESLKVKLMALGEEVLLQRSPSVLKKQRRNMLGEEEQAAVCLMALSCGFVFA 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3203g00046 138 ProSitePatterns GATA-type zinc finger domain. 12 37 IPR000679 GO:0006355|GO:0043565
Gabi3203g00046 138 ProSiteProfiles GATA-type zinc finger domain profile. 6 42 IPR000679 GO:0006355|GO:0043565
Gabi3203g00046 138 Gene3D - 7 70 IPR013088 GO:0006355|GO:0008270
Gabi3203g00046 138 MobiDBLite consensus disorder prediction 49 63 - -
Gabi3203g00046 138 MobiDBLite consensus disorder prediction 47 82 - -
Gabi3203g00046 138 SMART GATA_3 6 64 IPR000679 GO:0006355|GO:0043565
Gabi3203g00046 138 MobiDBLite consensus disorder prediction 64 78 - -
Gabi3203g00046 138 CDD ZnF_GATA 12 59 IPR000679 GO:0006355|GO:0043565
Gabi3203g00046 138 PANTHER OS01G0976800 PROTEIN 6 137 - -
Gabi3203g00046 138 Pfam GATA zinc finger 12 45 IPR000679 GO:0006355|GO:0043565
Gabi3203g00046 138 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 9 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3203g00046 Gabi-Chr3203 331770 333148 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3203g00046 5 138 C2C2-Gata Transcription Factor Family AT3G06740 50.370 2.05e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi3203g00046 GATA 5.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3203g00046 - - qsa:O6P43_011056 186.422