Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3203g00042 ATGTCGTATCGACCTACCGGAGACTCGAGGACCGAGGTCCGTCGGAATCGATACAAGGTGGCCGTGGATGCTGAAGAAGGTCGCAGAAGGCGAGAGGATACCATGGTCGAGATCCGCAAGAACCGTAGGGAAGAGAGTTTGCAGAAGAAGAGGCGCGAGGGCTTCCAATCTCAGCAGATGTCTGCATCAGTTCAATCTACTCCAGTAGAGAAGAAGTTGGAACAGATACCATCCATGGTTACAGGTGTTTGGAGTGGTGAAAATAACCTACAGTTTGAGGCAACAACTCAGTTCCGGAAGTTGCTTTCAATTGAACGTAGCCCACCAATAGAGGAGGTTATTCAATCTGGGGTAGTTCCACGCTTTGTTGAGTTCTTGATGAGGGAGGATTTTCCACAGCTGCAGTTTGAGGCAGCTTGGGCTTTGACTAATATAGCTTCTGGAACATCTGAAAACACTAAGGTAGTAATTGATCAAGGTGCTGTTCCAATTTTTGTTAAGCTTCTTGGTTCTCCCAGTGATGATGTTCGTGAACAGGCTGTGTGGGCATTAGGCAATATTGCTGGAGATTCTCCCAGATGCCGTGATCTTGTTCTCAGTCATGGAGCTTTGCTTCCTCTATTGGCACAATTGAATGAGCATGCCAAGCTGTCTATGCTCAGAAATGCTACATGGACCCTTTCAAACTTCTGCAGGGGGAAGCCACAGCCTACTTTTGATCAGGTTAAACCTGCACTTCCTGCTCTTGCCAGTCTTATCCATTCAAATGATGAAGAAGTCTTGACCGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTACAGATGACAAAATTCAAGGGGTAATTGATGTTGGTGTTTGTAGCCGACTTGTTGAGCTTCTACTGCACCCATCCCCTTCAGTGCTTATTCCTGCTCTTCGTACAGTTGGAAATATTGTCACTGGAGATGATGTGCAGACACAGGTTATCATCAACCATCAAGCTCTTCCATGTCTTCTGCATCTCTTGGTTAATAATTATAAAAAAAGCATCAAGAAGGAAGCATGTTGGACCATATCAAACATCACAGCTGGGAATAAGCTGCAGATTCAGGCAGTAGTTGAGGCTAATATAATTGGTCCTTTAGTCCGTTTGCTTCAAGATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATGTCAAATGCTACATCGGGTGGAACTCATGAACAAATCAAGTACCTTGTAAATCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATATGTCCCGATCCTAGGATTGTGACAGTTTGTTTGGAAGGGCTTGAAAACATATTGAAAGTAGGAGAAGCTGATAAAGTTGTTGGCAATACTGATGGTTTCAATCTATATGCCCAAATGATTGATGATGCTGAGGGGTTGGAGAAAATTGAGAACCTCCAGAGTCATGACAATAATGAGATTTATGAAAAGGCAGTGAAGATTCTCGAGACATACTGGTTGGAGGAAGAAGACGAGACTATGCCTCCAGGGGAAGGTTCTCAATCAGGGTTTAATTTTGGTGGCACTGATGTGCCCTCATTGCCTTCTGGTGGATTCAACTTTAATTAG 1599 0.4422 MSYRPTGDSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGFQSQQMSASVQSTPVEKKLEQIPSMVTGVWSGENNLQFEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDQGAVPIFVKLLGSPSDDVREQAVWALGNIAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPTFDQVKPALPALASLIHSNDEEVLTDACWALSYLSDGTDDKIQGVIDVGVCSRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQVIINHQALPCLLHLLVNNYKKSIKKEACWTISNITAGNKLQIQAVVEANIIGPLVRLLQDAEFDIKKEAAWAMSNATSGGTHEQIKYLVNQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKVVGNTDGFNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETMPPGEGSQSGFNFGGTDVPSLPSGGFNFN 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3203g00042 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 272 IPR000225 GO:0005515
Gabi3203g00042 532 SMART arm_5 275 315 IPR000225 GO:0005515
Gabi3203g00042 532 SMART arm_5 234 273 IPR000225 GO:0005515
Gabi3203g00042 532 SMART arm_5 190 232 IPR000225 GO:0005515
Gabi3203g00042 532 SMART arm_5 317 358 IPR000225 GO:0005515
Gabi3203g00042 532 SMART arm_5 106 147 IPR000225 GO:0005515
Gabi3203g00042 532 SMART arm_5 403 443 IPR000225 GO:0005515
Gabi3203g00042 532 SMART arm_5 360 400 IPR000225 GO:0005515
Gabi3203g00042 532 SMART arm_5 149 189 IPR000225 GO:0005515
Gabi3203g00042 532 MobiDBLite consensus disorder prediction 23 70 - -
Gabi3203g00042 532 FunFam Importin subunit alpha 13 52 - -
Gabi3203g00042 532 PIRSF Importin_alpha 6 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Gabi3203g00042 532 MobiDBLite consensus disorder prediction 502 532 - -
Gabi3203g00042 532 Gene3D - 74 497 IPR011989 -
Gabi3203g00042 532 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Gabi3203g00042 532 MobiDBLite consensus disorder prediction 23 52 - -
Gabi3203g00042 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Gabi3203g00042 532 MobiDBLite consensus disorder prediction 508 532 - -
Gabi3203g00042 532 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Gabi3203g00042 532 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Gabi3203g00042 532 Pfam Armadillo/beta-catenin-like repeat 317 358 IPR000225 GO:0005515
Gabi3203g00042 532 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Gabi3203g00042 532 Pfam Armadillo/beta-catenin-like repeat 362 399 IPR000225 GO:0005515
Gabi3203g00042 532 Pfam Armadillo/beta-catenin-like repeat 279 314 IPR000225 GO:0005515
Gabi3203g00042 532 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Gabi3203g00042 532 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Gabi3203g00042 532 Pfam Atypical Arm repeat 458 504 IPR032413 -
Gabi3203g00042 532 PANTHER IMPORTIN ALPHA 14 502 - -
Gabi3203g00042 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Gabi3203g00042 532 Gene3D - 13 52 IPR036975 GO:0006606
Gabi3203g00042 532 SUPERFAMILY ARM repeat 14 501 IPR016024 -
Gabi3203g00042 532 FunFam Importin subunit alpha 74 497 - -
Gabi3203g00042 532 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Gabi3203g00042 532 MobiDBLite consensus disorder prediction 53 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3203g00042 Gabi-Chr3203 321706 329412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3203g00042 286 465 U-box Gene Family AT2G23140 26.374 8.86e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3203g00042 K15042 - gmx:100789135 966.837