Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3203g00030 ATGTCTAACACCAGCAACAATGTCGTTGGGGTTGACAACACGTTCAGAAGAAAATTTGATCGAGAAGAGTATCTGGAACGAGCTCGGGAGCGTGAGAGGCAGGAGGAGGAGAGAGCGAAACCTAAAGCTAAAGGTCCTGCCGTTCAGAGGAAGCCCTTGAAACATAGAGATTATGAAGTGGACCTTGAATCCCGCTTGGGCAAGACTCAGGTTGTTACACCGGTTGCACCACTAAGCCAGCAGGCTGGATATTACTGCTCAGTTTGTGAGTGTGTGGTAAAGGACTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTTTGGGCATGTCTATGCGAGTAGAACGTGCTTCTCTCCAACAGGTTCAGGAAAGATTTGAAAATCTCAAGAAACGTAAAGATCTTGGCAGCTTCACAGAGCAAGATCTTGATGAGCGGATATTAAAACAGCAACAAGAGGAGGAAGAAAGAAAGCGACTGCGTCGAGAAAAGAAAAAAGAGAAGAAGGAGAAGGCAGTGGAAGAACCTGAAACCGACCCTGATGTTGCAGCCATGATGGGGTTTGGGGGTTTCCGGTCATCCAAGAAATGA 603 0.461 MSNTSNNVVGVDNTFRRKFDREEYLERARERERQEEERAKPKAKGPAVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLQQVQERFENLKKRKDLGSFTEQDLDERILKQQQEEEERKRLRREKKKEKKEKAVEEPETDPDVAAMMGFGGFRSSKK 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3203g00030 200 MobiDBLite consensus disorder prediction 27 53 - -
Gabi3203g00030 200 FunFam zinc finger matrin-type protein 2-like 78 116 - -
Gabi3203g00030 200 MobiDBLite consensus disorder prediction 148 200 - -
Gabi3203g00030 200 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 1 200 IPR040107 GO:0000398|GO:0005681
Gabi3203g00030 200 SMART ZnF_U1_5 81 115 IPR003604 GO:0003676|GO:0008270
Gabi3203g00030 200 Gene3D Classic Zinc Finger 78 116 - -
Gabi3203g00030 200 Pfam Zinc-finger of C2H2 type 84 108 - -
Gabi3203g00030 200 Coils Coil 116 136 - -
Gabi3203g00030 200 MobiDBLite consensus disorder prediction 148 182 - -
Gabi3203g00030 200 SUPERFAMILY beta-beta-alpha zinc fingers 79 121 IPR036236 -
Gabi3203g00030 200 Coils Coil 147 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3203g00030 Gabi-Chr3203 257160 260746 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3203g00030 4 146 C2H2 Transcription Factor Family AT3G05760 79.720 5.32e-84 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3203g00030 zf-C2H2_jaz 1.8e-06 CL0361