Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3203g00029 ATGTCTAACACCAGCAACAATGTAAGTGTCGTTGGGGTTGACAACACGTTCAGAAGAAAATTTGATCGAGAAGAGTATCTGGAACGAGCTCGGGAGCGTGAGAGGCAGGAGGAGGAGAGAGCGAAACCTAAAGCTAAAGGTCCTGCCGTTCAGAGGAAGCCCTTGAAACATAGAGATTATGAAGTGGACCTTGAATCCCGCTTGGGCAAGACTCAGGTTGTTACACCGGTTGCACCACTAAGCCAGCAGGCTGGATATTACTGCTCAGTTTGTGAGTGTGTGGTAAAGGACTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTTTGGGCATGTCTATGCGAGTAGAACGTGCTTCTCTCCAACAGGTTCAGGAAAGATTTGAAAATCTCAAGAAACGTAAAGATCTTGGCAGCTTCACAGAGCAAGATCTTGATGAGCGGATATTAAAACAGCAACAAGAGGAGGAAGAAAGAAAGCGACTGCGTCGAGAAAAGAAAAAAGAGAAGAAGGAGAAGGCAGTGGAAGAACCTGAAACCGACCCTGATGTTGCAGCCATGATGGGGTTTGGGGGTTTCCGGTCATCCAAGAAATGA 609 0.4598 MSNTSNNVSVVGVDNTFRRKFDREEYLERARERERQEEERAKPKAKGPAVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLQQVQERFENLKKRKDLGSFTEQDLDERILKQQQEEEERKRLRREKKKEKKEKAVEEPETDPDVAAMMGFGGFRSSKK 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3203g00029 202 Pfam Zinc-finger of C2H2 type 86 110 - -
Gabi3203g00029 202 MobiDBLite consensus disorder prediction 29 55 - -
Gabi3203g00029 202 Gene3D Classic Zinc Finger 80 118 - -
Gabi3203g00029 202 SUPERFAMILY beta-beta-alpha zinc fingers 81 123 IPR036236 -
Gabi3203g00029 202 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 2 202 IPR040107 GO:0000398|GO:0005681
Gabi3203g00029 202 FunFam zinc finger matrin-type protein 2-like 80 118 - -
Gabi3203g00029 202 SMART ZnF_U1_5 83 117 IPR003604 GO:0003676|GO:0008270
Gabi3203g00029 202 MobiDBLite consensus disorder prediction 149 184 - -
Gabi3203g00029 202 Coils Coil 118 138 - -
Gabi3203g00029 202 Coils Coil 149 181 - -
Gabi3203g00029 202 MobiDBLite consensus disorder prediction 149 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3203g00029 Gabi-Chr3203 257158 260651 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3203g00029 9 148 C2H2 Transcription Factor Family AT3G05760 80.000 2.46e-82 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3203g00029 zf-C2H2_jaz 1.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3203g00029 K12848 - gmx:100527057 288.885