Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3203g00023 ATGGAAGAGATTTACAGTGTGAAACCTCATTTGTCTTGTACAGAGGATGATGTTAGAGTCGGCAACGTGAGTGTTTCTACTACTTCTGAATTGCATCTGGGATCAGTGCCTAATGATTATCTACAGCTGGAAGAGGTAACCGAGTCTGATATCTCGGATCGGATGATCAAGATCCAGATCGCAAATCATCCTCTTTATCCAGATTTAGTATCTGCATACATAGAATGCCAAAAGGTTGGAGCACCACCAGAACTGGCATCCCTTCTCGAAGAAATAGGCCGAGAAATTCACCCCATGAATGCTCGCCCTGAGATAGGGGATGGTCCTGAACTTGACGAGTTCATGGAATCATACTGCGAAGTTCTTCATAGATACAAAGAGGAGCTGTCCAAACCCTTCAATGAAGCGACTTTGTTTTTGGGCAGTATGGAATCACAACTCAGCAACCTTTGTAAGGGAACACTAACAAAGTCATCGGATAATAACCGCTCGGATGAGGAATTAAGAAGTGAGGAGATAGAAGGAGTTGAAGGTCATGAATCTTCTGGGACTCGCCCAGGTGATCAAAAGGTTAAAGAAATGCTCCTTCATAAGTACAGTGGCCATTTTAGCAGTTTGAGAAAGGAATTTCTAAAAAGAAGGAAAAAGGGTAAGTTACCAAAGGATGCAAGGATGGCACTAATGGACTGGTGGAACACCCATCATAGATGGCCATATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGACGATACTGGACTGGATCAAAAACAGATAAATAATTGGTTTATCAATCAGAGAAAACGGCATTGGAAACCAACAGAGGATATGCGATTTGCCATTATGGAAGGGGTAAGCGGTGTCGGCATAGGAGAACCTATGTTTTTCTAG 891 0.4287 MEEIYSVKPHLSCTEDDVRVGNVSVSTTSELHLGSVPNDYLQLEEVTESDISDRMIKIQIANHPLYPDLVSAYIECQKVGAPPELASLLEEIGREIHPMNARPEIGDGPELDEFMESYCEVLHRYKEELSKPFNEATLFLGSMESQLSNLCKGTLTKSSDNNRSDEELRSEEIEGVEGHESSGTRPGDQKVKEMLLHKYSGHFSSLRKEFLKRRKKGKLPKDARMALMDWWNTHHRWPYPTEEEKVKLSDDTGLDQKQINNWFINQRKRHWKPTEDMRFAIMEGVSGVGIGEPMFF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3203g00023 296 Pfam Homeobox KN domain 230 269 IPR008422 GO:0003677|GO:0006355
Gabi3203g00023 296 Pfam KNOX2 domain 105 151 IPR005541 GO:0003677|GO:0005634
Gabi3203g00023 296 MobiDBLite consensus disorder prediction 159 188 - -
Gabi3203g00023 296 ProSitePatterns 'Homeobox' domain signature. 248 271 IPR017970 GO:0000981|GO:0006355
Gabi3203g00023 296 ProSiteProfiles ELK domain profile. 190 210 IPR005539 GO:0003677
Gabi3203g00023 296 CDD homeodomain 213 273 IPR001356 GO:0003677
Gabi3203g00023 296 ProSiteProfiles 'Homeobox' domain profile. 210 273 IPR001356 GO:0003677
Gabi3203g00023 296 Pfam KNOX1 domain 56 97 IPR005540 GO:0003677|GO:0005634
Gabi3203g00023 296 SMART KNOX1_2 54 98 IPR005540 GO:0003677|GO:0005634
Gabi3203g00023 296 SMART HOX_1 212 277 IPR001356 GO:0003677
Gabi3203g00023 296 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 72 280 - -
Gabi3203g00023 296 MobiDBLite consensus disorder prediction 153 188 - -
Gabi3203g00023 296 Gene3D - 208 280 - -
Gabi3203g00023 296 SMART ELK_2 190 211 IPR005539 GO:0003677
Gabi3203g00023 296 SMART KNOX2_2 101 152 IPR005541 GO:0003677|GO:0005634
Gabi3203g00023 296 SUPERFAMILY Homeodomain-like 212 281 IPR009057 -
Gabi3203g00023 296 Pfam ELK domain 192 211 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3203g00023 Gabi-Chr3203 196712 201049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3203g00023 47 283 Homeobox Transcription Factor Family AT1G70510 51.984 3.88e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi3203g00023 KNOX2 3.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3203g00023 - - gmx:102660463 447.203